yCrypticRNAs (version 0.99.2)

gene_coverage: Compute coverage data for a specific gene.

Description

This function computes data for a specific gene and remove intronic regions.

Usage

gene_coverage(coverageDataSet, name, introns = NULL)

Arguments

coverageDataSet

an objet of type coverageDataSet containing the coverage values for each sample.

name

a character vector indicating the gene name.

introns

an objet of type annotationsSet containing the annotations of the intronic regions. Note: The introns must have same name as the gene they are associated with.

Value

An objet of type geneCoverage containing the coverage values for the specified gene for all the samples in coverageDataSet.

Examples

data(rna_seq_signals)
data(introns)
gene_coverage(rna_seq_signals, "YER109C", introns)