yCrypticRNAs (version 0.99.2)

ratio_score: 3'/5' ratio score

Description

Calculates the cryptic score (ratio score) using the 3'/5' ratio method as described in Cheung et al., 2008.

Usage

ratio_score(geneCoverage, windowLength = 100)

Arguments

geneCoverage

object of type geneCoverage containing the coverage values for all samples.

windowLength

A integer indicating the length of the window to use at each end of the gene.

Value

An object of class 'CrypticScore' with the following components:

geneAnnotation

An object of class annotationsSet containing the information on the gene.

crypticScore

Cryptic score obtained by comparing type2 data to type1 data

controls

A list containing the scores obtained by comparing replicates of each type of data

method

The method used.

Examples

data(yer109c)
ratio_score(yer109c)