RDocumentation
Moon
Learn R
Search all packages and functions
yaqcaffy (version 1.32.0)
Affymetrix expression data quality control and reproducibility analysis
Description
Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.
Copy Link
Copy
Link to current version
Version
Version
1.32.0
1.30.0
1.28.0
1.26.0
Down Chevron
Version
1.32.0
License
Artistic-2.0
Maintainer
Laurent Gatto
Last Published
January 1st, 1970
Functions in yaqcaffy (1.32.0)
Search functions
getRatioProbes
Get the names of degradation control probes on the array
getAllInt
Get the summerized MAS5 values for a given spike probe
yaqc.plot
Plots a YAQCStats object
probeSelectionInterface
Tcltk Interface to Generate an Instance of YaqcControlProbes for a given Chip Set
getBioProbes
Get the names of the Bio spike probes on the array
getQCRatios
Compute qc probe ratios using GCOS intensity values
yaqc.affy
'YAQCStats' constructor
getOutliers
Get outliers for the different YAQCStatsObject slots
reprodPlot
Plot human whole genome GeneChips reproductibility
getSpikeProbes
Get the names of all spike probes on the array
YAQCStats-class
Class "YAQCStats"
YaqcControlProbes-class
Class "YaqcControlProbes"