yaqcaffy (version 1.32.0)

getAllInt: Get the summerized MAS5 values for a given spike probe

Description

This function retrieves the expression intensities prvided by the object of class "YAQCStats" for the probe which names are compatible with the given pattern and return their mean value.

Usage

getAllInt(YAQCStatsObject,pattern)

Arguments

YAQCStatsObject

an object of type "YAQCStats"

pattern

a pattern used to select the probe names to be used

Value

An object of type "numeric" in which the mean expression intensities of each array are given.

Examples

    ## load a dataset
    library(affydata)
    data(Dilution)
    ## perform quality control
    qc <- yaqc(Dilution)
    ## get intensities for the biob
    ## spikes probe sets
    getAllInt(qc,"biob")
    ## or
    getAllInt(qc,"b[3|5|m]")