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zGPS.AO (version 0.1.0)

Zero Inflated Gamma Poisson Shrinker with Adverse Event Ontology

Description

The method zGPS.AO (Zero Inflated Gamma Poisson Shrinker with AE (Adverse Event) ontology) is based on the zero-inflated negative binomial distribution. It estimates the association between a specific vaccine and an adverse event group, as well as associations between that vaccine and individual adverse events within the adverse event group. This model handles the adverse event count data with excess zeros and over-dispersion, and it allows borrowing information from adverse event data in the same group. Details can be found in "Data Mining in Large Frequency Tables With Ontology, with an Application to the Vaccine Adverse Event Reporting System." Bangyao Zhao, Lili Zhao (2020) .

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Version

Install

install.packages('zGPS.AO')

Monthly Downloads

1

Version

0.1.0

License

GPL-3

Maintainer

Bangyao Zhao

Last Published

November 6th, 2020

Functions in zGPS.AO (0.1.0)

zinb_analysis_tool

Perform ZINB analysis on real data.
vaers_data

The VAERS data
plot_lambdas

Generate the scatter plot of lambdas
plotly_lambdas

Generate the scatter plot of lambdas (Plotly)
plot_heatmap

Generate the heatmap
plotly_heatmap

Generate the heatmap (Plotly)
dd.meddra

Medical Dictionary for Regulatory Activities (MedDRA)
merge_list

An example of merge list