zebu: Local Association Measures

Description

The zebu R package implements different tools related to local association measures in three main functions. It replaces the previous web application written using shiny.

• lassie estimates local (and global) association measures: Ducher's Z, pointwise mutual information, normalized pointwise mutual information and chi-squared residuals.

• permtest accesses the significance of local (and global) association values using p-values estimated by permutations.

• chisqtest accesses the significance for two dimensional chi-squared analysis.

Installation

Install R and RStudio.

Get the released version from CRAN.

install.packages("zebu")

Usage and Theory

Please read the vignette.

vignette("zebu")

Contact

• Olivier Martin

oliviermfmartin@tutanota.com

• Michel Ducher

michel.ducher@chu-lyon.fr

License

zebu 0.2.2 Copyright (C) 2023

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

The GNU General Public License is available at https://gnu.org/licenses/

The source code can be found at https://github.com/oliviermfmartin/zebu