lassie_get

Subroutine for <code>lassie</code> methods. Tries to retrieve a value from a <code>lassie</code> object
and gives an error if value does not exist.

Implements the estimation of local (and global) association measures: Lewontin's D, Ducher's Z, pointwise mutual information, normalized pointwise mutual information and chi-squared residuals. The significance of local (and global) association is accessed using p-values estimated by permutations.

Olivier M. F. Martin

zebu

Local Association Measures

Michel Ducher

lassie_get function

<dl><dt>x</dt>
<dd><code>lassie</code> S3 object.</dd>
<dt>what_x</dt>
<dd>vector specifying values to be returned:<ul>
<li>'local': local association measure values (default).</li>
<li>'obs': observed probabilities.</li>
<li>'exp': expected probabilities.</li>
<li>'local_p': p-value of local association (after running <code>permtest</code> or <code>chisqtest</code>).</li>
</ul></dd></dl>

Arguments

Return the value of 'lassie' object — lassie_get

<dl>

<dt>x</dt>
<dd><code>lassie</code> S3 object.</dd>


<dt>what_x</dt>
<dd>vector specifying values to be returned:<ul>
<li>'local': local association measure values (default).</li>
<li>'obs': observed probabilities.</li>
<li>'exp': expected probabilities.</li>
<li>'local_p': p-value of local association (after running <code>permtest</code> or <code>chisqtest</code>).</li>
</ul></dd>

</dl>

lassie_get: Return the value of 'lassie' object

Description

Usage

Value

Arguments

Examples