stringgaussnet (version 1.1)

MultiDEGeneExpr.default: Function to create an object of class MultiDEGeneExpr

Description

This function allows to create an object of class MultiDEGeneExpr from multiple DEGeneExpr objects.

Usage

## S3 method for class 'default':
MultiDEGeneExpr(...)

Arguments

...

Objects of class DEGeneExpr to gather in the new object of class MultiDEGeneExpr

Value

• An object of class MultiDEGeneExpr, which is a list of DEGeneExpr objects

See Also

MultiDEGeneExpr, print.MultiDEGeneExpr, MultiNetworks.default

Examples

# data(SpADataExpression)
# data(SpADEGenes)
# data(SpASamples)
# SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)

# StatusFactor<-paste(SpASamples$status,SpASamples$b27,sep=".")
# names(StatusFactor)=SpASamples$chipnum

# NodesForSIMoNe<-rownames(SpADEGenes)[1:17]
# GaussianSpAData<-DEGeneExpr(t(SpADataExpression[NodesForSIMoNe,]),SpADEGenes[NodesForSIMoNe,])

# MultiSpAData<-MultiDEGeneExpr(GaussianSpAData,DEGeneExpr(t(SpADataExpression[18:34,]),
#	SpADEGenes[18:34,]),DEGeneExpr(t(SpADataExpression[35:51,]),SpADEGenes[35:51,]))
# MultiSpANetworks<-MultiNetworks(MultiSpAData,
#	SelectInteractionsSTRING=c("coexpression","experimental","knowledge"),STRINGThreshold=0.9,
#	FilterSIMoNeOptions=list(Threshold=0.4),Factors=StatusFactor,
#	STRINGOptions=list(AddAnnotations=FALSE),SIMoNeOptions=list(AddAnnotations=FALSE),
#	WGCNAOptions=list(AddAnnotations=FALSE))