stringgaussnet (version 1.1)

print.MultiDEGeneExpr:

Print function for object of class MultiDEGeneExpr

Description

This function displays specifically object of class MultiDEGeneExpr, with previews of expression data and results from DE genes analysis for each item.

Usage

"print"(x, nlimit = Inf, ...)

Arguments

x

Object of class MultiDEGeneExpr

nlimit

Which number of lines to preview for data frames

...

Additional parameters from generic print function

See Also

MultiDEGeneExpr, MultiDEGeneExpr.default

Examples

# data(SpADataExpression)
# data(SpADEGenes)
# data(SpASamples)
# SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)

# StatusFactor<-paste(SpASamples$status,SpASamples$b27,sep=".")
# names(StatusFactor)=SpASamples$chipnum

# NodesForSIMoNe<-rownames(SpADEGenes)[1:17]
# GaussianSpAData<-DEGeneExpr(t(SpADataExpression[NodesForSIMoNe,]),SpADEGenes[NodesForSIMoNe,])

# MultiSpAData<-MultiDEGeneExpr(GaussianSpAData,DEGeneExpr(t(SpADataExpression[18:34,]),
#	SpADEGenes[18:34,]),DEGeneExpr(t(SpADataExpression[35:51,]),SpADEGenes[35:51,]))
# print(MultiSpAData)
# MultiSpANetworks<-MultiNetworks(MultiSpAData,
#	SelectInteractionsSTRING=c("coexpression","experimental","knowledge"),STRINGThreshold=0.9,
#	FilterSIMoNeOptions=list(Threshold=0.4),Factors=StatusFactor,
#	STRINGOptions=list(AddAnnotations=FALSE),SIMoNeOptions=list(AddAnnotations=FALSE),
#	WGCNAOptions=list(AddAnnotations=FALSE))