R-based analysis of ChIP-seq And Differential Expression - a
tool for integrating a count-based ChIP-seq analysis with
differential expression summary data.
Description
Rcade (which stands for "R-based analysis of ChIP-seq And
Differential Expression") is a tool for integrating ChIP-seq
data with differential expression summary data, through a
Bayesian framework. A key application is in identifing the
genes targeted by a transcription factor of interest - that is,
we collect genes that are associated with a ChIP-seq peak, and
differential expression under some perturbation related to that
TF.