aafPathwayItem-class: Class aafPathwayItem, a class for KEGG pathway id elements
Description
An abstraction for KEGG pathway id elements from Bioconductor
data packages. Multiple instances of this class are held by the
wrapper class aafPathway.
Objects from the Class
Objects are generally created by the aafPathway constructor.
Objects can also be created manually by calls of the form
new("aafPathwayItem", id, name, enzyme).Slots
id:-
Object of class
character containing KEGG pathway id
name:-
Object of class
character containing textual name
enzyme:-
Object of class
character containing the Enzyme
Commision number if applicable
Methods
- getText
-
(aafPathwayItem): Returns textual representation formatted
"
id: name".
- getURL
-
(aafPathwayItem): Returns a URL to the corresponding entry
in the Kyoto Encyclopedia of Genes and Genomes database. If
there is a corresponding EC number, it will be highlighted
in red.
- getHTML
-
(aafPathwayItem): Returns an HTML representation including the
URL link and pathway name.