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Umpire (version 2.0.11)

Simulating Realistic Gene Expression and Clinical Data

Description

The Ultimate Microrray Prediction, Reality and Inference Engine (UMPIRE) is a package to facilitate the simulation of realistic microarray data sets with links to associated outcomes. See Zhang and Coombes (2012) . Version 2.0 adds the ability to simulate realistic mixed-typed clinical data.

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Version

Install

install.packages('Umpire')

Monthly Downloads

172

Version

2.0.11

License

Apache License (== 2.0)

Maintainer

Kevin Coombes

Last Published

February 4th, 2025

Functions in Umpire (2.0.11)

transforms

Transform functions
MVN-class

The "MVN" Class
IndependentNormal-class

The "IndependentNormal" Class
IndependentLogNormal-class

The "IndependentLogNormal" Class
NoiseModel-class

The "NoiseModel" Class
Engine-class

The "Engine" Class
EngineWithActivity-class

The "EngineWithActivity" Class
CancerModel-class

The "CancerModel" Class
NormalVsCancer

Simulating Cancer Versus Normal Datasets
alterMean-method

Methods "alterMean" and "alterSD"
rand-method

Method "rand"
addControl-method

Method "addControl"
makeDataTypes

Discretize a Continuous Data Set to Mixed Types
nComponents-method

Method "nComponents"
blur-method

Method "blur"
MixedTypeEngine-class

The "MixedTypeEngine" Class
ClinicalNoiseModel

A Noise Model for Clinical Data
BlockHyperParameters-class

The "BlockHyperParameters" Class
SurvivalModel-class

The "SurvivalModel" Class
CancerEngine-class

The "CancerEngine" Class