hapFabia
Results of a hapFabia
call.
List containing
mergedIBDsegmentList
: an object of the class
IBDsegmentList
that contains the extracted IBD segments
that were extracted from two histograms with different offset.
res
: the result of FABIA.
sPF
: samples per loading of this FABIA result.
annot
: annotation for the genotype data.
IBDsegmentList1
: an object of the class
IBDsegmentList
that contains the result of IBD segment extraction from the first histogram.
IBDsegmentList2
: an object of the class
IBDsegmentList
that contains the result of IBD segment extraction from the second histogram.
mergedIBDsegmentList1
: an object of the class
IBDsegmentList
that contains the merged result of the first IBD segment
extraction (redundancies removed).
mergedIBDsegmentList2
: an object of the class
IBDsegmentList
that contains the merged result of the second IBD segment
extraction (redundancies removed).
hapRes
mergedIBDsegmentList
: an object of the class
IBDsegmentList
that contains the extracted IBD segments
that were extracted from two histograms with different offset.
res
: the result of FABIA.
sPF
: samples per loading of this FABIA result.
annot
: annotation for the genotype data.
IBDsegmentList1
: an object of the class
IBDsegmentList
that contains the result of IBD segment extraction from the first histogram.
IBDsegmentList2
: an object of the class
IBDsegmentList
that contains the result of IBD segment extraction from the second histogram.
mergedIBDsegmentList1
: an object of the class
IBDsegmentList
that contains the merged result of the first IBD segment
extraction (redundancies removed).
mergedIBDsegmentList2
: an object of the class
IBDsegmentList
that contains the merged result of the second IBD segment
extraction (redundancies removed).
hapFabia
S. Hochreiter et al., FABIA: Factor Analysis for Bicluster Acquisition, Bioinformatics 26(12):1520-1527, 2010.
IBDsegment-class
,
IBDsegmentList-class
,
analyzeIBDsegments
,
compareIBDsegmentLists
,
extractIBDsegments
,
findDenseRegions
,
hapFabia
,
hapFabiaVersion
,
hapRes
,
chr1ASW1000G
,
IBDsegmentList2excel
,
identifyDuplicates
,
iterateIntervals
,
makePipelineFile
,
matrixPlot
,
mergeIBDsegmentLists
,
mergedIBDsegmentList
,
plotIBDsegment
,
res
,
setAnnotation
,
setStatistics
,
sim
,
simu
,
simulateIBDsegmentsFabia
,
simulateIBDsegments
,
split_sparse_matrix
,
toolsFactorizationClass
,
vcftoFABIA