sim: R implementation of sim.
sim
Similarity measure for IBD segments, tagSNVs, and individuals.
sim(x,y,simv="minD",minInter=2)
"minD"
"jaccard"
"dice"
"maxD"
Implementation in R.
S. Hochreiter et al., FABIA: Factor Analysis for Bicluster Acquisition, Bioinformatics 26(12):1520-1527, 2010.
IBDsegment-class
IBDsegmentList-class
analyzeIBDsegments
compareIBDsegmentLists
extractIBDsegments
findDenseRegions
hapFabia
hapFabiaVersion
hapRes
chr1ASW1000G
IBDsegmentList2excel
identifyDuplicates
iterateIntervals
makePipelineFile
matrixPlot
mergeIBDsegmentLists
mergedIBDsegmentList
plotIBDsegment
res
setAnnotation
setStatistics
simu
simulateIBDsegmentsFabia
simulateIBDsegments
split_sparse_matrix
toolsFactorizationClass
vcftoFABIA
x <- sample(1:15,8) y <- sample(1:15,8) sim(x,y,simv="minD",minInter=1)
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