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AICcmodavg (version 2.0-3)

Model Selection and Multimodel Inference Based on (Q)AIC(c)

Description

This package includes functions to create model selection tables based on Akaike's information criterion (AIC) and the second-order AIC (AICc), as well as their quasi-likelihood counterparts (QAIC, QAICc). The package also features functions to conduct classic model averaging (multimodel inference) for a given parameter of interest or predicted values, as well as a shrinkage version of model averaging parameter estimates. Other handy functions enable the computation of relative variable importance, evidence ratios, and confidence sets for the best model. The present version works with Cox proportional hazards models and conditional logistic regression ('coxph' and 'coxme' classes), linear models ('lm' class), generalized linear models ('glm', 'vglm', 'hurdle', and 'zeroinfl' classes), linear models fit by generalized least squares ('gls' class), linear mixed models ('lme' class), generalized linear mixed models ('mer' and 'merMod' classes), multinomial and ordinal logistic regressions ('multinom'}, 'polr', 'clm', and 'clmm' classes), robust regression models ('rlm' class), beta regression models ('betareg' class), parametric survival models ('survreg' class), nonlinear models ('nls' and 'gnls' classes), and nonlinear mixed models ('nlme' and 'nlmer' classes). The package also supports various models of 'unmarkedFit' and 'maxLikeFit' classes estimating demographic parameters after accounting for imperfect detection probabilities. Some functions also allow the creation of model selection tables for Bayesian models of the 'bugs' and 'rjags' classes. Objects following model selection and multimodel inference can be formatted to LaTeX using 'xtable' methods included in the package.

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Version

Install

install.packages('AICcmodavg')

Monthly Downloads

9,453

Version

2.0-3

License

GPL (>= 2)

Maintainer

Marc J Mazerolle

Last Published

January 15th, 2015

Functions in AICcmodavg (2.0-3)

AICc

Computing AIC, AICc, QAIC, and QAICc
bullfrog

Bullfrog Occupancy and Common Reed Invasion
calcium

Blood Calcium Concentration in Birds
AICcCustom

Custom Computation of AIC, AICc, QAIC, and QAICc from User-supplied Input
extractCN

Compute Condition Number
confset

Computing Confidence Set for the Kullback-Leibler Best Model
predictSE

Computing Predicted Values and Standard Errors
newt

Newt Capture-mark-recapture Data
evidence

Compute Evidence Ratio Between Two Models
pine

Strength of Pine Wood Based on the Density Adjusted for Resin Content
dry.frog

Frog Dehydration Experiment on Three Substrate Types
aictabCustom

Custom Creation of Model Selection Tables from User-supplied Input
dictab

Create Model Selection Tables from Bayesian Analyses
fam.link.mer

Extract Distribution Family and Link Function
cement

Heat Expended Following Hardening of Portland Cement
AICcmodavg-package

Model Selection and Multimodel Inference Based on (Q)AIC(c)
extractLL

Extract Log-Likelihood of Model
lizards

Habitat Preference of Lizards
importance

Compute Importance Values of Variable
Nmix.gof.test

Compute Chi-square Goodness-of-fit Test for N-mixture Models
c_hat

Estimate Dispersion for Poisson and Binomial GLM's and GLMM's
extractSE

Extract SE of Fixed Effects of coxme, glmer, and lmekin Fit
xtable

Format Objects to LaTeX or HTML
tortoise

Gopher Tortoise Distance Sampling Data
min.trap

Anuran Larvae Counts in Minnow Traps Across Pond Type
mb.gof.test

Compute MacKenzie and Bailey Goodness-of-fit Test for Single Season and Dynamic Occupancy Models
iron

Iron Content in Food
boot.wt

Compute Model Selection Relative Frequencies
DIC

Computing DIC
multComp

Create Model Selection Tables based on Multiple Comparisons
modavgEffect

Compute Model-averaged Effect Sizes (Multimodel Inference on Group Differences)
AICcmodavg-deprecated

Deprecated Functions in AICcmodavg Package
aictab

Create Model Selection Tables
modavgShrink

Compute Model-averaged Parameter Estimate with Shrinkage (Multimodel Inference)
salamander

Salamander Capture-mark-recapture Data
modavg.utility

Various Utility Functions
modavg

Compute Model-averaged Parameter Estimate (Multimodel Inference)
modavgCustom

Compute Model-averaged Parameter Estimate (Multimodel Inference) from User-supplied Input
modavgPred

Compute Model-averaged Predictions
turkey

Turkey Weight Gain
beetle

Flour Beetle Data