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AICcmodavg (version 2.00)

Model selection and multimodel inference based on (Q)AIC(c)

Description

This package includes functions to create model selection tables based on Akaike's information criterion (AIC) and the second-order AIC (AICc), as well as their quasi-likelihood counterparts (QAIC, QAICc). The package also features functions to conduct classic model averaging (multimodel inference) for a given parameter of interest or predicted values, as well as a shrinkage version of model averaging parameter estimates. Other handy functions enable the computation of relative variable importance, evidence ratios, and confidence sets for the best model. The present version works with Cox proportional hazards models and conditional logistic regression ('coxph' and 'coxme' classes), linear models ('lm' class), generalized linear models ('glm', 'vglm', and 'zeroinfl' classes), linear models fit by generalized least squares ('gls' class), linear mixed models ('lme' class), generalized linear mixed models ('mer' and 'merMod' classes), multinomial and ordinal logistic regressions ('multinom'}, 'polr', 'clm', and 'clmm' classes), robust regression models ('rlm' class), nonlinear models ('nls' class), and nonlinear mixed models ('nlme' and 'nlmer' classes). The package also supports various models of 'unmarkedFit' and 'maxLikeFit' classes estimating demographic parameters after accounting for imperfect detection probabilities. Some functions also allow the creation of model selection tables for Bayesian models of the 'bugs' and 'rjags' classes.

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Version

Install

install.packages('AICcmodavg')

Monthly Downloads

9,453

Version

2.00

License

GPL (>= 2)

Maintainer

Marc J Mazerolle

Last Published

July 15th, 2014

Functions in AICcmodavg (2.00)

fam.link.mer

Extract Distribution Family and Link Function
DIC

Computing DIC
pine

Strength of Pine Wood Based on the Density Adjusted for Resin Content
extractSE

Extract SE of Fixed Effects of coxme, glmer, and lmekin Fit
AICcmodavg-deprecated

Deprecated Functions in AICcmodavg Package
tortoise

Gopher Tortoise distance sampling data
aictab

Create Model Selection Tables
modavgPred

Compute Model-averaged Predictions
Nmix.gof.test

Compute Chi-square Goodness-of-fit Test for N-mixture Models
cement

Heat Expended Following Hardening of Portland Cement
confset

Computing Confidence Set for the Kullback-Leibler Best Model
lizards

Habitat Preference of Lizards
importance

Compute Importance Values of Variable
dry.frog

Frog Dehydration Experiment on Three Substrate Types
AICcmodavg-package

Model Selection and Multimodel Inference Based on (Q)AIC(c)
salamander

Salamander capture-mark-recapture data
c_hat

Compute Estimate of Dispersion for Poisson and Binomial GLM's
evidence

Compute Evidence Ratio Between Two Models
multComp

Create Model Selection Tables based on Multiple Comparisons
beetle

Flour Beetle Data
iron

Iron Content in Food
modavgEffect

Compute Model-averaged Effect Sizes (Multimodel Inference on Group Differences)
predictSE

Computing Predicted Values and Standard Errors
modavg.utility

Various Utility Functions
bullfrog

Bullfrog occupancy data and common reed invasion
extractLL

Extract Log-Likelihood of Model
AICc

Computing AIC, AICc, QAIC, and QAICc
mb.gof.test

Compute MacKenzie and Bailey Goodness-of-fit Test for Single Season Occupancy Models
turkey

Turkey Weight Gain
boot.wt

Compute Model Selection Relative Frequencies
calcium

Blood Calcium Concentration in Birds Data
modavg

Compute Model-averaged Parameter Estimate (Multimodel Inference)
min.trap

Anuran larvae counts in minnow traps across pond type
modavgShrink

Compute Model-averaged Parameter Estimate with Shrinkage (Multimodel Inference)
dictab

Create Model Selection Tables from Bayesian Analyses