CAGEr (version 1.14.0)

CTSSnormalizedTpm: Extracting normalized CAGE signal for TSSs from CAGEset object

Description

Extracts the normalized CAGE signal for all detected TSSs in all CAGE datasets from a CAGEset object.

Usage

CTSSnormalizedTpm(object)

Arguments

object

A CAGEset object

Value

Returns a data.frame with normalized CAGE signal supporting each TSS (rows) in every CAGE dataset (columns).

See Also

CTSScoordinates

CTSStagCount

Examples

load(system.file("data", "exampleCAGEset.RData", package="CAGEr"))

CAGEsignal <- CTSSnormalizedTpm(exampleCAGEset)
head(CAGEsignal)