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ClueR (version 1.0)

CLUster Evaluation (CLUE)

Description

CLUE is an R package for identifying optimal number of clusters in a given time-course dataset clustered by cmeans or kmeans algorithms.

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Version

Install

install.packages('ClueR')

Monthly Downloads

229

Version

1.0

License

GPL-3

Maintainer

Pengyi Yang

Last Published

February 4th, 2015

Functions in ClueR (1.0)

PhosphoSite.mouse

PhosphoSitePlus annotations for mouse
PhosphoSite.human

PhosphoSitePlus annotations for human
runClue

Run CLUster Evaluation
fuzzPlot

Visualize fuzzy clustering results
ClueR-package

CLUster Evaluation R package
clustOptimal

Generate optimal clustering
Pathways.KEGG

KEGG pathway annotations
hES

Human embryonic stem cell phosphoproteomics data
enrichmentTest

Fisher's exact test-based enrichment test
Pathways.reactome

Reactome pathway annotations
temporalSimu

Temporal data simulation
clustEnrichment

Cluster enrichment test