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ClueR (version 1.0)
CLUster Evaluation (CLUE)
Description
CLUE is an R package for identifying optimal number of clusters in a given time-course dataset clustered by cmeans or kmeans algorithms.
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Install
install.packages('ClueR')
Monthly Downloads
256
Version
1.0
License
GPL-3
Maintainer
Pengyi Yang
Last Published
February 4th, 2015
Functions in ClueR (1.0)
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PhosphoSite.mouse
PhosphoSitePlus annotations for mouse
PhosphoSite.human
PhosphoSitePlus annotations for human
runClue
Run CLUster Evaluation
fuzzPlot
Visualize fuzzy clustering results
ClueR-package
CLUster Evaluation R package
clustOptimal
Generate optimal clustering
Pathways.KEGG
KEGG pathway annotations
hES
Human embryonic stem cell phosphoproteomics data
enrichmentTest
Fisher's exact test-based enrichment test
Pathways.reactome
Reactome pathway annotations
temporalSimu
Temporal data simulation
clustEnrichment
Cluster enrichment test