Learn R Programming

⚠️There's a newer version (1.2) of this package.Take me there.

DBGSA (version 1.1)

methods of distance-based gene set functional enrichment analysis.

Description

This package provides methods and examples to support a method of Gene Set Functional Enrichment Analysis (GSFEA). DBGSA is a novel distance-based gene set enrichment analysis method. We consider that, the distance between 2 groups with different phenotype by focusing on the gene expression should be larger, if a certain gene functional set was significantly associated with a particular phenotype.

Copy Link

Version

Install

install.packages('DBGSA')

Monthly Downloads

16

Version

1.1

License

GPL-3

Maintainer

Li Jin

Last Published

May 17th, 2011

Functions in DBGSA (1.1)

avelinkdis

Computing the distance by group average method
functionall

P values of distance-based gene set enrichment analysis
randdis

Randomly generating some gene expression profiles by gene resampling
valuep

function which computes p values from different phenotypes by distance matrix
DBGSA-package

methods of distance-based gene set functional enrichment analysis
afExp

Gene expression profile
distable

function to compute the specific distances between different phenotypes
centdis

Computing the distance by gravity method
distance

distances between case and control group
b1

Gene set function expression profile
rand

distances of gene expression obtained by gene resampling