# HH v3.1-32

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## Statistical Analysis and Data Display: Heiberger and Holland

Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

## Functions in HH

Name | Description | |

anova.ancovaplot | ANOVA table for a c("ancovaplot","trellis") object. | |

ancova-class | Class "ancova" Analysis of Covariance | |

ae.dotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

as.likert | Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data. | |

anovaMean | ANOVA table from the group sample sizes, means, and standard deviations. | |

AEdotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

arma.loop | Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs. | |

aovSufficient | Analysis of variance from sufficient statistics for groups. | |

ancova | Compute and plot oneway analysis of covariance | |

AEdotplot.data.frame | AE (Adverse Events) dotplot of incidence and relative risk, support functions | |

as.matrix.listOfNamedMatrices | Convert a list of matrices to a single matrix | |

combineLimits.trellisvector | Combine limits on a one-dimensional trellis object. | |

axis.i2wt | specialized axis function for interaction2wt. | |

as.multicomp | Support functions in R for MMC (mean--mean multiple comparisons) plots. | |

bivariateNormal | Plot the bivariate normal density using wireframe for specified rho. | |

ci.plot | Plot confidence and prediction intervals for simple linear regression | |

export.eps | Exports a graph to an EPS file. | |

diag.maybe.null | Returns a value for the diagonal of NA and NULL arguments. | |

pdiscunif | Discrete Uniform Distribution | |

cplx | Generate a sequence spanning the xlim of a lattice window. | |

emptyMainLeftAxisLeftStripBottomLegend | Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items. | |

Discrete4 | Discrete with four levels color dataset. | |

col.hh | Initializing Trellis Displays | |

F.curve | plot a chisquare or a F-curve. | |

hh | Resolve filenames relative to the HH directory. | |

col3x2 | col3x2 color dataset | |

HH-package | Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland | |

HH.regsubsets | Display tabular results for Best Subsets Regression. | |

as.vector.trellis | Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object. | |

cp.calc | Rearranges and improves the legibility of the output from the stepwise function in S-Plus. | |

glhtWithMCP.993 | Retain averaging behavior that was previously available in glht. | |

diagplot5new | Transpose of ECDF for centered fitted values and residuals from a linear model. | |

grid.yaxis.hh | make x- and y-axis labels | |

hovBF | Homogeneity of Variance: Brown--Forsyth method | |

hov | Homogeneity of Variance | |

ladder | Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x. | |

interaction.positioned | interaction method for positioned factors. | |

datasets | Datasets for Statistical Analysis and Data Display, Heiberger and Holland | |

diagQQ | QQ plot of regression residuals. | |

do.formula.trellis.xysplom | Interprets model formulas for xysplom and extended bwplots | |

intxplot | Interaction plot, with an option to print standard error bars. | |

if.R | Conditional Execution for R or S-Plus | |

interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

lm.case | case statistics for regression analysis | |

logit | Logistic and odds functions and their inverses. | |

lm.regsubsets | Evaluate lm model with highest adjusted $R^2$. | |

LikertPercentCountColumns | Display likert plots with percents in the first column of panels and counts in the second column of panels. | |

GSremove | Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet | |

defunct | Defunct Functions in Package 'HH' | |

mmcplot | MMC (Mean-mean Multiple Comparisons) plots in lattice. | |

extra | Miscellaneous functions that I wish were in or consistent between S-Plus and R. | |

mmcAspect | Control aspect ratio in MMC plots to maintain isomeans grid as a square. | |

mmcisomeans | Functions used by mmcplot. | |

mmc | MMC (Mean--mean Multiple Comparisons) plots. | |

OneWayVarPlot | Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model. | |

dchisq.intermediate | Intermediate f and chisq functions to simplify writing for both R and S-Plus. | |

NTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial. | |

OddsRatio | Calculate or plot the odds ratio for a 2x2 table of counts. | |

NormalAndTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals. | |

orthog.complete | Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns. | |

interval | Prediction and Confidence Intervals for glm Objects | |

hhpdf | R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex | |

lmatRows | Find the row numbers in the lmat corresponding to the focus factor. | |

HHscriptnames | Find absolute pathname of a script file for the HH book in the HH package. | |

lmatPairwise | lmatPairwise | |

legendGrob2wt | place separate keys to the left of each row of a trellis | |

panel.confintMMC | Confidence interval panel for MMC tiebreaker plots, or confidence interval plot. | |

panel.likert | Panel functions for likert that include a stackWidth argument | |

panel.bwplot.intermediate.hh | Panel functions for bwplot. | |

panel.cartesian | trellis panel function, with labeled rows and columns and without strip labels. | |

panel.dotplot.tb | Dotplot with evenly spaced tiebreakers. | |

panel.ci.plot | Default Panel Function for ci.plot | |

panel.bwplott | Extension to S-Plus trellis to allow transposed plots. | |

panel.interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

lmplot | Four types of residual plots for linear models. | |

latticeresids | Subroutine used by residual.plots.lattice | |

print.latticeresids | Print a latticeresids object. | |

position | Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined. | |

partial.corr | partial correlations | |

likertMosaic | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style. | |

mmcPruneIsomeans | MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor. | |

matrix.trellis | Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work. | |

mcalinfct | MCA multiple comparisons analysis (pairwise) | |

mmc.mean | MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design. | |

multicomp.reverse | Force all comparisons in a "multicomp" object to have the same sign. | |

NormalAndTPower | Construct a power graph based on the NTplot. | |

normalApproxBinomial | Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals. | |

print.TwoTrellisColumns | Print two conformable trellis plots in adjacent columns with user control of widths. | |

print.NormalAndTplot | Print method for Normal and t plots from NTplot. | |

rbind.trellis | Extend matrix reshaping functions to trellis objects. | |

panel.acf | Panel functions for tsdiagplot. | |

regrresidplot | Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares. | |

panel.axis.right | Right-justify right-axis tick labels. | |

objip | loop through all attached directories looking for pattern, possibly restricting to specified class or mode. | |

strip.background0 | Turn off the coloring in the trellis strip labels. Color 0 is the background color. | |

ResizeEtc.likertPlot | Display multiple independent trellis objects, representing likert plots, on the same coordinated scale. | |

strip.xysplom | strip function that is able to place the correlation or regression coefficient into the strip label. | |

residual.plots.lattice | Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns. | |

seqplot.forecast | seqplot with confidence bands for the forecast region. | |

seqplot | Time series plot. | |

sufficient | Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors. | |

ResizeEtc | Display multiple independent trellis objects on the same coordinated scale. | |

npar.arma | Count the number of parameters in an ARIMA model specification. | |

panel.isomeans | isomeans grid for MMC plots. | |

tsacfplots | Coordinated time series and ACF and PCF plots. | |

useOuterStripsT2L1 | Three-factor generalization of latticeExtra::useOuterStrips | |

positioned-class | Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor. | |

panel.bwplot.superpose | Panel function for bwplot that displays an entire box in the colors coded by groups. | |

perspPlane | Helper functions for regr2.plot | |

plot.hov | Homogeneity of Variance Plot | |

panel.pairs.hh | Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments. | |

panel.xysplom | panel method for xysplom. | |

plot.mmc.multicomp | MMC (Mean--mean Multiple Comparisons) plot. | |

plot.multicomp | Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons. | |

print.tsdiagplot | Print a "tsdiagplot" object. | |

push.vp.hh | push and pop a grid viewport, turn clipping off, change scale. | |

regr2.plot | 3D plot of z against x and y, with regression plane fit and display of squared residuals. | |

regr1.plot | plot x and y, with optional straight line fit and display of squared residuals | |

resid.squares | plot squared residuals in inches to match the y-dimension | |

pyramidLikert | Print a Likert plot as a Population Triangle | |

residVSfitted | Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat | |

residual.plots | Residual plots for a linear model. | |

summary.arma.loop | summary and print and subscript methods for tsdiagplot and related objects. | |

tsdiagplot | Times series diagnostic plots for a structured set of ARIMA models. | |

vif | Calculate the Variance Inflation Factor | |

X.residuals | Residuals from the regression of each column of a data.frame against all the other columns. | |

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## Last month downloads

## Details

Type | Package |

Date | 2016-06-22 |

License | GPL (>= 2) |

NeedsCompilation | no |

Packaged | 2016-06-22 04:32:23 UTC; rmh |

Repository | CRAN |

Date/Publication | 2016-06-23 01:13:28 |

imports | abind , colorspace , grDevices , Hmisc , leaps , methods , RColorBrewer , reshape2 , Rmpfr (>= 0.6.0) , shiny (>= 0.13.1) , vcd |

suggests | car , microplot , mvtnorm , Rcmdr , RcmdrPlugin , RcmdrPlugin.HH , TeachingDemos |

depends | graphics , grid , gridExtra (>= 2.0.0) , lattice , latticeExtra , multcomp , R (>= 3.0.2) , stats |

Contributors | Richard Heiberger |

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