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HH (version 3.1-32)

Statistical Analysis and Data Display: Heiberger and Holland

Description

Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

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Version

Install

install.packages('HH')

Monthly Downloads

5,991

Version

3.1-32

License

GPL (>= 2)

Maintainer

Richard Heiberger

Last Published

June 22nd, 2016

Functions in HH (3.1-32)

anova.ancovaplot

ANOVA table for a c("ancovaplot","trellis") object.
ancova-class

Class "ancova" Analysis of Covariance
ae.dotplot

AE (Adverse Events) dotplot of incidence and relative risk
as.likert

Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data.
anovaMean

ANOVA table from the group sample sizes, means, and standard deviations.
AEdotplot

AE (Adverse Events) dotplot of incidence and relative risk
arma.loop

Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
aovSufficient

Analysis of variance from sufficient statistics for groups.
ancova

Compute and plot oneway analysis of covariance
AEdotplot.data.frame

AE (Adverse Events) dotplot of incidence and relative risk, support functions
as.matrix.listOfNamedMatrices

Convert a list of matrices to a single matrix
combineLimits.trellisvector

Combine limits on a one-dimensional trellis object.
axis.i2wt

specialized axis function for interaction2wt.
as.multicomp

Support functions in R for MMC (mean--mean multiple comparisons) plots.
bivariateNormal

Plot the bivariate normal density using wireframe for specified rho.
ci.plot

Plot confidence and prediction intervals for simple linear regression
export.eps

Exports a graph to an EPS file.
diag.maybe.null

Returns a value for the diagonal of NA and NULL arguments.
pdiscunif

Discrete Uniform Distribution
cplx

Generate a sequence spanning the xlim of a lattice window.
emptyMainLeftAxisLeftStripBottomLegend

Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items.
Discrete4

Discrete with four levels color dataset.
col.hh

Initializing Trellis Displays
F.curve

plot a chisquare or a F-curve.
hh

Resolve filenames relative to the HH directory.
col3x2

col3x2 color dataset
HH-package

Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland
HH.regsubsets

Display tabular results for Best Subsets Regression.
as.vector.trellis

Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object.
cp.calc

Rearranges and improves the legibility of the output from the stepwise function in S-Plus.
glhtWithMCP.993

Retain averaging behavior that was previously available in glht.
diagplot5new

Transpose of ECDF for centered fitted values and residuals from a linear model.
grid.yaxis.hh

make x- and y-axis labels
hovBF

Homogeneity of Variance: Brown--Forsyth method
hov

Homogeneity of Variance
ladder

Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
interaction.positioned

interaction method for positioned factors.
datasets

Datasets for Statistical Analysis and Data Display, Heiberger and Holland
diagQQ

QQ plot of regression residuals.
do.formula.trellis.xysplom

Interprets model formulas for xysplom and extended bwplots
intxplot

Interaction plot, with an option to print standard error bars.
if.R

Conditional Execution for R or S-Plus
interaction2wt

Plot all main effects and twoway interactions in a multifactor design
lm.case

case statistics for regression analysis
logit

Logistic and odds functions and their inverses.
lm.regsubsets

Evaluate lm model with highest adjusted $R^2$.
LikertPercentCountColumns

Display likert plots with percents in the first column of panels and counts in the second column of panels.
GSremove

Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet
defunct

Defunct Functions in Package 'HH'
mmcplot

MMC (Mean-mean Multiple Comparisons) plots in lattice.
extra

Miscellaneous functions that I wish were in or consistent between S-Plus and R.
mmcAspect

Control aspect ratio in MMC plots to maintain isomeans grid as a square.
mmcisomeans

Functions used by mmcplot.
mmc

MMC (Mean--mean Multiple Comparisons) plots.
OneWayVarPlot

Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model.
dchisq.intermediate

Intermediate f and chisq functions to simplify writing for both R and S-Plus.
NTplot

Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial.
OddsRatio

Calculate or plot the odds ratio for a 2x2 table of counts.
NormalAndTplot

Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals.
orthog.complete

Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns.
interval

Prediction and Confidence Intervals for glm Objects
hhpdf

R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex
lmatRows

Find the row numbers in the lmat corresponding to the focus factor.
HHscriptnames

Find absolute pathname of a script file for the HH book in the HH package.
lmatPairwise

lmatPairwise
legendGrob2wt

place separate keys to the left of each row of a trellis
panel.confintMMC

Confidence interval panel for MMC tiebreaker plots, or confidence interval plot.
panel.likert

Panel functions for likert that include a stackWidth argument
panel.bwplot.intermediate.hh

Panel functions for bwplot.
panel.cartesian

trellis panel function, with labeled rows and columns and without strip labels.
panel.dotplot.tb

Dotplot with evenly spaced tiebreakers.
panel.ci.plot

Default Panel Function for ci.plot
panel.bwplott

Extension to S-Plus trellis to allow transposed plots.
panel.interaction2wt

Plot all main effects and twoway interactions in a multifactor design
lmplot

Four types of residual plots for linear models.
latticeresids

Subroutine used by residual.plots.lattice
print.latticeresids

Print a latticeresids object.
position

Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
partial.corr

partial correlations
likertMosaic

Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style.
mmcPruneIsomeans

MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor.
matrix.trellis

Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work.
mcalinfct

MCA multiple comparisons analysis (pairwise)
mmc.mean

MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design.
multicomp.reverse

Force all comparisons in a "multicomp" object to have the same sign.
NormalAndTPower

Construct a power graph based on the NTplot.
normalApproxBinomial

Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals.
print.TwoTrellisColumns

Print two conformable trellis plots in adjacent columns with user control of widths.
print.NormalAndTplot

Print method for Normal and t plots from NTplot.
rbind.trellis

Extend matrix reshaping functions to trellis objects.
panel.acf

Panel functions for tsdiagplot.
regrresidplot

Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares.
panel.axis.right

Right-justify right-axis tick labels.
objip

loop through all attached directories looking for pattern, possibly restricting to specified class or mode.
strip.background0

Turn off the coloring in the trellis strip labels. Color 0 is the background color.
ResizeEtc.likertPlot

Display multiple independent trellis objects, representing likert plots, on the same coordinated scale.
strip.xysplom

strip function that is able to place the correlation or regression coefficient into the strip label.
residual.plots.lattice

Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns.
seqplot.forecast

seqplot with confidence bands for the forecast region.
seqplot

Time series plot.
sufficient

Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors.
ResizeEtc

Display multiple independent trellis objects on the same coordinated scale.
npar.arma

Count the number of parameters in an ARIMA model specification.
panel.isomeans

isomeans grid for MMC plots.
tsacfplots

Coordinated time series and ACF and PCF plots.
useOuterStripsT2L1

Three-factor generalization of latticeExtra::useOuterStrips
positioned-class

Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor.
panel.bwplot.superpose

Panel function for bwplot that displays an entire box in the colors coded by groups.
perspPlane

Helper functions for regr2.plot
plot.hov

Homogeneity of Variance Plot
panel.pairs.hh

Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments.
panel.xysplom

panel method for xysplom.
plot.mmc.multicomp

MMC (Mean--mean Multiple Comparisons) plot.
plot.multicomp

Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons.
print.tsdiagplot

Print a "tsdiagplot" object.
push.vp.hh

push and pop a grid viewport, turn clipping off, change scale.
regr2.plot

3D plot of z against x and y, with regression plane fit and display of squared residuals.
regr1.plot

plot x and y, with optional straight line fit and display of squared residuals
resid.squares

plot squared residuals in inches to match the y-dimension
pyramidLikert

Print a Likert plot as a Population Triangle
residVSfitted

Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat
residual.plots

Residual plots for a linear model.
summary.arma.loop

summary and print and subscript methods for tsdiagplot and related objects.
tsdiagplot

Times series diagnostic plots for a structured set of ARIMA models.
vif

Calculate the Variance Inflation Factor
X.residuals

Residuals from the regression of each column of a data.frame against all the other columns.