hlaSampleAllele

an object of <code><a rd-options="" href="/link/hlaAlleleClass?package=HIBAG&version=1.8.3" data-mini-rdoc="HIBAG::hlaAlleleClass">hlaAlleleClass</a></code>

TrueHLA

a list of HLA alleles, the validation samples are
        limited to those having HLA alleles in <code>allele.limit</code>, or
        <code>NULL</code> for no limit. <code>allele.limit</code> could be character-type,
        <code><a rd-options="" href="/link/hlaAttrBagClass?package=HIBAG&version=1.8.3" data-mini-rdoc="HIBAG::hlaAttrBagClass">hlaAttrBagClass</a></code> or <code><a rd-options="" href="/link/hlaAttrBagObj?package=HIBAG&version=1.8.3" data-mini-rdoc="HIBAG::hlaAttrBagObj">hlaAttrBagObj</a></code>

allele.limit

"2-digit", "4-digit", "6-digit", "8-digit", "allele",
        "protein", "2", "4", "6", "8", "full" or "": "allele" = "2-digit",
        "protein" = "4-digit", "full" and "" mean no limit on resolution

max.resolution


    Get sample IDs from HLA types limited to a set of HLA alleles.


Genetics

It is a software package for imputing HLA types using SNP data,
and relies on a training set of HLA and SNP genotypes. HIBAG can be used
by researchers with published parameter estimates instead of requiring
access to large training sample datasets. It combines the concepts of
attribute bagging, an ensemble classifier method, with haplotype inference
for SNPs and HLA types. Attribute bagging is a technique which improves
the accuracy and stability of classifier ensembles using bootstrap
aggregating and random variable selection.

Xiuwen Zheng

HIBAG

HLA Genotype Imputation with Attribute Bagging

hlaSampleAllele function

an object of <code><a href="hlaAlleleClass" rd-options="">hlaAlleleClass</a></code>

a list of HLA alleles, the validation samples are
        limited to those having HLA alleles in <code>allele.limit</code>, or
        <code>NULL</code> for no limit. <code>allele.limit</code> could be character-type,
        <code><a href="hlaAttrBagClass" rd-options="">hlaAttrBagClass</a></code> or <code><a href="hlaAttrBagObj" rd-options="">hlaAttrBagObj</a></code>

Get sample IDs from HLA types limited to a set of HLA alleles.

hlaSampleAllele: Get sample IDs from HLA types with a filter

Description

Usage

Arguments

Value

See Also

Examples