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HIest (version 2.0)
Hybrid index estimation
Description
Uses likelihood to estimate ancestry and heterozygosity. Evaluates simple hybrid classifications (parentals, F1, F2, backcrosses). Estimates genomic clines.
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Version
Version
2.0
1.0
Install
install.packages('HIest')
Monthly Downloads
14
Version
2.0
License
GPL (>= 3)
Maintainer
Ben Fitzpatrick
Last Published
February 16th, 2013
Functions in HIest (2.0)
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HIC
Closed form maximum-likelihood estimates of ancestry and heterozygosity for diagnostic markers
Cline.fit
Fit alternative cline functions to data from one or more genetic loci.
Bluestone
Original marker data for hybrid tiger salamander larvae collected from Bluestone Quarry pond.
HItest
Compare the likelihood of hybrid classification to MLE estimates of ancestry and heterozygosity.
HIclass
Calculate likelihoods for early generation hybrid genotype classes
spatial.HZ
Simulate a hybrid zone in continuous, 2-dimensional space
gcline.fn
Fit a genomic cline using maximum likelihood
threeway
Find joint maximum-likelihood estimates of ancestry and heterozygosity for a sample of hybrids in a three-way hybrid zone
HIC3
Closed form maximum-likelihood estimates of ancestry and heterozygosity for diagnostic markers in a three-way hybrid zone
thirdclass
Calculate likelihoods for early generation hybrid genotype classes in a three-way hybrid zone.
spatial.AD
Simulate admixture in continuous, 2-dimensional space
longX2
Longs heterogeneity test for admixture proportions in a single population.
HILL
Hybrid Index Log Likelihood
HIsurf
Describe the joint likelihood surface of ancestry and heterozygosity for a hybrid genotype.
HItest3
Compare the likelihood of hybrid classification to MLE estimates of ancestry and heterozygosity for three-way hybrid zones.
HIest-package
Functions for estimating hybrid indices (ancestry and heterozygosity) and fitting genomic clines.
HIest
Find the joint maximum likelihood estimates of ancestry and interclass heterozygosity in a sample of hybrids.
Cline.plot
Graph genomic clines fit to data
