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IdMappingRetrieval

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Version

Version

1.20.0

License

GPL-2

Maintainer

Alex Lisovich

Last Published

February 15th, 2017

Functions in IdMappingRetrieval (1.20.0)

addServices.ServiceManager

Add services to the ServiceManager object
AnnotationEnsembl

The AnnotationEnsembl class
getColumns.AnnotationAffx

Extract ID match pairs from the data frame obtained from the Affymetrix online data repository
Annotation

The Annotation class
readDF.AnnotationEnvision

Retrieve the annotation data frame using Envision online query system
readDF.AnnotationEnsemblCsv

Retrieve the annotation data frame from the Ensembl csv query results file
as.IdMap

Perform the transformation of the UniquePairs object into the IdMap object
AnnotationEnvision

The AnnotationEnvision class
IdMappingAnnotationData.root

Annotation data root directory
readDF.AnnotationNetAffx

Retrieve the annotation data frame from the service data repository
ServiceManager

The ServiceManager class
subsetByColumn

Extract subset of rows from a data frame or a list of data frames by intersecting on a particular column
IdMappingRetrieval-package

Id Mapping Retrieval.
getColumns.AnnotationEnvision

Extract ID match pairs from the data frame obtained from the Envision online query system
getColumns.AnnotationEnsemblCsv

Extract ID match pairs from the data frame obtained from the Ensembl online query system
getIdMapList.ServiceManager

Collect ID mapping data from various online query systems utilizing Annotation service functionality
AnnotationEnsemblCsv

The AnnotationEnsemblCsv class
getServiceRoot.Annotation

Get a root directory for a particular annotation object
setServices.ServiceManager

Set the list of services for a ServiceManager object
getDataFrame.Annotation

Get the entire data set available from a particular service in a form of a data frame
getIdMap.Annotation

Get an IdMap object using the data retrieved by a particular service represented by annotation object
filesExist.AnnotationNetAffx

Check if the AnnotationNetAffx contains the reference to an existing data file or directory
getColumns.Annotation

Extract ID match pairs from the data frame obtained from the annotation data repository
getFolderName.Annotation

Get caching folder name for a given Annotation object
getDataFrameList.ServiceManager

Collect raw data data from various online query systems utilizing Annotation service functionality
AnnotationNetAffx

The AnnotationNetAffx class
readDF.Annotation

Retrieve the annotation data frame from the service data repository
setOptions.Annotation

Set the parameters for an annotation object
AnnotationAffx

The AnnotationAffx class
as.UniquePairs

Create a UniquePairs object by converting a single IdMap or a list of Id Maps into a single or list of unique pairs data structures optionally intersecting the secondary ID set with an external secondary ID set if farther data size reduction is necessary
readDF.AnnotationAffx

Retrieve the annotation data frame from the service data repository
readDF.AnnotationEnsembl

Retrieve the annotation data frame from the Ensembl online query system
Generic R.00 object methods

Generic R.00 object methods
getColumns.AnnotationEnsembl

Extract ID match pairs from the data frame obtained from the Ensembl online query system
getServices.ServiceManager

Get list of annotation services encapsulated within the particular ServiceManager object
swapKeys

Swap the primary and secondary key columns