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MBCluster.Seq (version 1.0)
Model-Based Clustering for RNA-seq Data
Description
Cluster genes based on Poisson or Negative-Binomial model for RNA-Seq or other digital gene expression (DGE) data
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Version
Version
1.0
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Install
install.packages('MBCluster.Seq')
Monthly Downloads
13
Version
1.0
License
GPL (>= 3)
Maintainer
Yaqing Si
Last Published
October 29th, 2012
Functions in MBCluster.Seq (1.0)
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RNASeq.Data
Standardize RNASeq Data for Clustering
Hybrid.Tree
Do hybrid-hierarchical clustering for RNA-seq data
Count
Sample of Count Data
plotHybrid.Tree
Plot the tree structure of the hybrid-hierarchical clustering results.
KmeansPlus.RNASeq
Initialize the cluster centroids by a model-based Kmeans++ algorithm
MBCluster.Seq.Internal
Internal function for MBCluster.Seq package