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OGSA (version 1.2.0)
Outlier Gene Set Analysis
Description
OGSA provides a global estimate of pathway deregulation in cancer subtypes by integrating the estimates of significance for individual pathway members that have been identified by outlier analysis.
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Version
Version
1.2.0
Version
1.2.0
License
GPL (== 2)
Maintainer
Michael F Ochs
Last Published
February 15th, 2017
Functions in OGSA (1.2.0)
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copaInt
copaInt
outCallRankE
outCallRankE
pathGS
Gene set defined by BioCarta pathway
expressionSetPheno
expressionSetPheno
expr
expr
pheno
pheno
outCount
outCount
OGSA-package
This package uses outlier statistics and gene set analysis to identify deregulated pathways.
expressionSetDataSet
expressionSetDataSet
outCallTibE
outCallTibE
cnv
Copy number variation data
outMap
outMap
testGScogps
testGScogps
copaStat
copaStat
outRank
outRank
outCallRank
outCallRank
copaIntE
copaIntE
meth
meth
outCallTib
outCallTib