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R2admb (version 0.7.10)

ADMB to R interface functions

Description

A series of functions to call AD Model Builder (i.e., compile and run models) from within R, read the results back into R as "admb" objects, and provide standard accessors (i.e. coef(), vcov(), etc.)

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Version

Install

install.packages('R2admb')

Monthly Downloads

720

Version

0.7.10

License

GPL

Maintainer

Ben Bolker

Last Published

September 22nd, 2013

Functions in R2admb (0.7.10)

setup_admb

Set up AD Model Builder environment variables
read_plt

Read in ADMB profile file
do_admb

Compile and/or run an ADMB model, collect output
AIC.admb

Standard accessor functions for ADMB model fits
compile_admb

Compile ADMB files, run, read output
write_pin

Write parameter and data files for ADMB
plot.admb_hist

Plot MCMC histogram
run.control

set run options for running ADMB via R
extract_gradient

Extract gradients
admb_version

Query ADMB version
mcmc.control

Control options for MCMC after ADMB fitting
R2admb-package

ADMB to R interface functions
read_pars

Read in parameters from an AD Model Builder run
find_large_cor

Find large correlations