createCellHTSFromFiles

The platelist (See vignette("RNAinteract")) 

filePlatelist

A (arbtrary) string providing the name for the screen

name

path

Giving the plate dimensions, e.g. pdim=c(8,12) or pdim=c(16,24).

pdim


A cellHTS2 object is created from a set of text files.


 manip 

RNAinteract estimates genetic interactions from
multi-dimensional read-outs like features extracted from
images. The screen is assumed to be performed in multi-well
plates or similar designs. Starting from a list of features
(e.g. cell number, area, fluorescence intensity) per well,
genetic interactions are estimated. The packages provides
functions for reporting interacting gene pairs, plotting
heatmaps and double RNAi plots. An HTML report can be written
for quality control and analysis.

Bernd Fischer

RNAinteract

Estimate Pairwise Interactions from multidimensional features

createCellHTSFromFiles function

The platelist (See vignette("RNAinteract"))

A cellHTS2 object is created from a set of text files.

createCellHTSFromFiles: create cellHTS2 object from text files

Description

Usage

Arguments

Value

Details

References

See Also