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RVtests (version 1.0)

Rare Variant Tests Using Multiple Regression Methods

Description

Regularized multiple regression methods: ridge regression (RR), principal components regression (PCR), partial least squares regression (PLS), sparse PLS (SPLS), and the LASSO for testing rare variants association with disease traits.

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Version

Install

install.packages('RVtests')

Monthly Downloads

16

Version

1.0

License

GPL (>= 2)

Maintainer

C Xu

Last Published

July 14th, 2012

Functions in RVtests (1.0)

sample.cgeno

Genotype counts dataset
SPLS

Sparse PLS for RV Tests
gene2

gene2 dataset
geno2count

Transforming genotype codes matrix to counts
PCR

Principal Components Regression for RV tests
PLS

Partial Least Squares Regression for RV tests
LASSO

LASSO for Rare Variant Tests
RVtests-package

Rare Variant Tests Using Multiple Regression Methods
RR

Ridge Regression for RV Tests
VTWOD

VT and WOD for RV Tests
count2geno

Transforming genotype alleles counts to genotype matrix
gene3

gene3 dataset