S4Vectors v0.10.2

S4 implementation of vectors and lists

The S4Vectors package defines the Vector and List virtual classes and a set of generic functions that extend the semantic of ordinary vectors and lists in R. Package developers can easily implement vector-like or list-like objects as concrete subclasses of Vector or List. In addition, a few low-level concrete subclasses of general interest (e.g. DataFrame, Rle, and Hits) are implemented in the S4Vectors package itself (many more are implemented in the IRanges package and in other Bioconductor infrastructure packages).

Functions in S4Vectors

Name Description
Hits-comparison Comparing and ordering hits
aggregate-methods Compute summary statistics of subsets of vector-like objects
FilterMatrix-class Matrix for Filter Results
expand Unlist the list-like columns of a DataFrame object
Hits-setops Set operations on Hits objects
Hits-class Hits objects
DataFrame-class DataFrame objects
FilterRules-class Collection of Filter Rules
Annotated-class Annotated class
DataTable-class DataTable objects
Rle-runstat Fixed-width running window summaries
S4Vectors internals S4Vectors internals
List-utils Common operations on List objects
Rle-utils Common operations on Rle objects
Rle-class Rle objects
Pairs-class Pairs objects
List-class List objects
shiftApply-methods Apply a function over subsequences of 2 vector-like objects
HitsList-class List of Hits objects
isSorted Test if a vector-like object is sorted
Vector-class Vector objects
Vector-comparison Compare, order, tabulate vector-like objects
Vector-setops Set operations on vector-like objects
str-utils Some utility functions to operate on strings
subsetting-utils Subsetting utilities
zip-methods Convert between parallel vectors and lists
SimpleList-class SimpleList objects
split-methods Divide a vector-like object into groups
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Encoding UTF-8
biocViews Infrastructure, DataRepresentation
License Artistic-2.0
Collate S4-utils.R show-utils.R utils.R normarg-utils.R isSorted.R subsetting-utils.R vector-utils.R logical-utils.R int-utils.R str-utils.R eval-utils.R DataTable-class.R Annotated-class.R Vector-class.R Vector-comparison.R Vector-setops.R Hits-class.R Hits-comparison.R Hits-setops.R Rle-class.R Rle-utils.R List-class.R List-comparison.R List-utils.R SimpleList-class.R HitsList-class.R DataFrame-class.R expand-methods.R FilterRules-class.R aggregate-methods.R shiftApply-methods.R split-methods.R Pairs-class.R zzz.R

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