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SemiCompRisks (version 3.4)

Hierarchical Models for Parametric and Semi-Parametric Analyses of Semi-Competing Risks Data

Description

Hierarchical multistate models are considered to perform the analysis of independent/clustered semi-competing risks data. The package allows to choose the specification for model components from a range of options giving users substantial flexibility, including: accelerated failure time or proportional hazards regression models; parametric or non-parametric specifications for baseline survival functions and cluster-specific random effects distribution; a Markov or semi-Markov specification for terminal event following non-terminal event. While estimation is mainly performed within the Bayesian paradigm, the package also provides the maximum likelihood estimation approach for several parametric models. The package also includes functions for univariate survival analysis as complementary analysis tools.

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Version

Install

install.packages('SemiCompRisks')

Monthly Downloads

386

Version

3.4

License

GPL (>= 2)

Maintainer

Kyu Lee

Last Published

February 3rd, 2021

Functions in SemiCompRisks (3.4)

CIBMTR_Params

Estimates for model parameters from semi-competing risks analysis of the CIBMTR data using Weibull illness-death model.
FreqID_HReg

The function to fit parametric Weibull models for the frequentist anlaysis of semi-competing risks data.
CIBMTR

Center for International Blood and Bone Marrow Transplant Research (CIBMTR) data
BayesSurv_HReg

The function to implement Bayesian parametric and semi-parametric regression analyses for univariate time-to-event data in the context of hazard regression (HReg) models.
survData

A simulated clustered univariate survival data.
old.functions

Old functions
scrData

A simulated clustered semi-competing risks data set
PPD

Function to predict the joint probability involving two event times in Bayesian illness-death models
FreqSurv_HReg

The function to fit parametric Weibull models for the frequentist analysis of univariate survival data.
simID

The function that simulates independent/cluster-correlated semi-competing risks data under semi-Markov Weibull/Weibull-MVN models.
SemiCompRisks-package

Algorithms for fitting parametric and semi-parametric models to semi-competing risks data / univariate survival data.
simSurv

The function that simulates independent/cluster-correlated right-censored survival data under Weibull/Weibull-Normal model.
initiate.startValues_AFT

The function that initiates starting values for a single chain.
BayesID_HReg

The function to implement Bayesian parametric and semi-parametric analyses for semi-competing risks data in the context of hazard regression (HReg) models.
BayesSurv_AFT

The function to implement Bayesian parametric and semi-parametric analyses for univariate survival data in the context of accelerated failure time (AFT) models.
BMT

Data on 137 Bone Marrow Transplant Patients
BayesID_AFT

The function to implement Bayesian parametric and semi-parametric analyses for semi-competing risks data in the context of accelerated failure time (AFT) models.
initiate.startValues_HReg

The function that initiates starting values for a single chain.
methods

Methods for objects of classes, Bayes_HReg/Bayes_AFT/Freq_HReg.