RDocumentation
Moon
Learn R
Search all packages and functions
TPES (version 1.0.0)
Tumor Purity Estimation using SNVs
Description
A bioinformatics tool for the estimation of the tumor purity from sequencing data. It uses the set of putative clonal somatic single nucleotide variants within copy number neutral segments to call tumor cellularity.
Copy Link
Copy
Link to current version
Version
Version
1.0.0
Down Chevron
Install
install.packages('TPES')
Monthly Downloads
115
Version
1.0.0
License
MIT + file LICENSE
Maintainer
Alessio Locallo
Last Published
January 11th, 2019
Functions in TPES (1.0.0)
Search functions
TCGA_A8_A0A7_seg
SEG file (segmented data) for sample TCGA-A8-A0A7
TCGA_HT_8564_seg
SEG file (segmented data) for sample TCGA-HT-8564
TCGA_A8_A0A7_ploidy
Ploidy data for sample TCGA-A8-A0A7
TPES_purity
Tumor Purity Estimation using SNVs
TCGA_A8_A0A7_maf
SNVsReadCountsFile for sample TCGA-A8-A0A7
TCGA_HT_8564_ploidy
Ploidy data for sample TCGA-HT-8564
TCGA_HT_8564_maf
SNVsReadCountsFile for sample TCGA-HT-8564
TPES_report
Tumor Purity Estimation using SNVs