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abctools (version 1.0.4)

Tools for ABC Analyses

Description

Tools for approximate Bayesian computation including summary statistic selection and assessing coverage.

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Install

install.packages('abctools')

Monthly Downloads

296

Version

1.0.4

License

GPL (>= 2)

Issues

0

Pull Requests

0

Stars

6

Forks

3

Maintainer

Matt Nunes

Last Published

January 14th, 2016

Functions in abctools (1.0.4)

abctools-package

Tools for ABC analyses
combmat

table of combinations
AS.select

Summary statistics selection using approximate sufficiency.
stage2

stage2
AS.test

Test for relative approximate sufficiency between two posterior samples.
mc.ci

Diagnostic plots for model choice coverage output
nn.ent

Works out entropy of a sample.
mincrit

Summary statistics selection by minimizing a posterior sample measure.
rsse

Simulation error measures.
saABC

Summary statistic construction by semi-automatic ABC
selectsumm

Generic function for selecting summary statistics in ABC inference.
coal

Examples of coalescent data
semiauto.abc

Performs semi-automatic ABC based on summary statistics regression.
cov.pi

Coverage property diagnostics