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bamlss (version 1.1-2)

Bayesian Additive Models for Location, Scale, and Shape (and Beyond)

Description

Infrastructure for estimating probabilistic distributional regression models in a Bayesian framework. The distribution parameters may capture location, scale, shape, etc. and every parameter may depend on complex additive terms (fixed, random, smooth, spatial, etc.) similar to a generalized additive model. The conceptual and computational framework is introduced in Umlauf, Klein, Zeileis (2019) and the R package in Umlauf, Klein, Simon, Zeileis (2019) .

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Version

Install

install.packages('bamlss')

Monthly Downloads

1,195

Version

1.1-2

License

GPL-2 | GPL-3

Maintainer

Nikolaus Umlauf

Last Published

February 19th, 2020

Functions in bamlss (1.1-2)

DIC

Deviance Information Criterion
coef.bamlss

Extract BAMLSS Coefficients
WAIC

Watanabe-Akaike Information Criterion (WAIC)
continue

Continue Sampling
bamlss.frame

Create a Model Frame for BAMLSS
colorlegend

Plot a Color Legend
bamlss-package

Bayesian Additive Models for Location Scale and Shape (and Beyond)
cox_mcmc

Cox Model Markov Chain Monte Carlo
Austria

Austria States and Topography
BayesX

Markov Chain Monte Carlo for BAMLSS using BayesX
GAMart

GAM Artificial Data Set
Volcano

Artificial Data Set based on Auckland's Maunga Whau Volcano
boost

Boosting BAMLSS
fitted.bamlss

BAMLSS Fitted Values
c95

Compute 95% Credible Interval and Mean
gF

Get a BAMLSS Family
bamlss

Fit Bayesian Additive Models for Location Scale and Shape (and Beyond)
lin

Linear Effects for BAMLSS
Surv2

Create a Survival Object for Joint Models
bboost

Bootstrap Boosting
bfit

Fit BAMLSS with Backfitting
smooth.construct.kr.smooth.spec

Kriging Smooth Constructor
cox_mode

Cox Model Posterior Mode Estimation
LondonFire

London Fire Data
MVNORM

Create Samples for BAMLSS by Multivariate Normal Approximation
bamlss.formula

Formulae for BAMLSS
dl.bamlss

Deep Learning BAMLSS
la

Lasso Smooth Constructor
family.bamlss

Distribution Families in bamlss
GMCMC

General Markov Chain Monte Carlo for BAMLSS
bamlss.engine.helpers

BAMLSS Engine Helper Functions
model.frame.bamlss

BAMLSS Model Frame
plot2d

Plot 2D Effects
jm_bamlss

Fit Flexible Additive Joint Models
plot.bamlss

Plotting BAMLSS
parameters

Extract or Initialize Parameters for BAMLSS
bamlss.engine.setup

BAMLSS Engine Setup Function
pathplot

Plot Coefficients Paths
results.bamlss.default

Compute BAMLSS Results for Plotting and Summaries
plotmap

Plot Maps
rmf

Remove Special Characters
cox_predict

Cox Model Prediction
homstart_data

HOMSTART Precipitation Data
n

Neural Networks for BAMLSS
neighbormatrix

Compute a Neighborhood Matrix from Spatial Polygons
plot3d

Plot 3D Effects
residuals.bamlss

Compute BAMLSS Residuals
smooth.construct

Constructor Functions for Smooth Terms in BAMLSS
isgd

Implicit Stochastic Gradient Descent Optimizer
plotblock

Factor Variable and Random Effects Plots
model.matrix.bamlss.frame

Construct/Extract BAMLSS Design Matrices
s2

Special Smooths in BAMLSS Formulae
rb

Random Bits for BAMLSS
smooth.construct.ms.smooth.spec

Smooth constructor for monotonic P-splines
samples

Extract Samples
simSurv

Simulate Survival Times
randomize

Transform Smooth Constructs to Random Effects
smooth_check

MCMC Based Simple Significance Check for Smooth Terms
terms.bamlss

BAMLSS Model Terms
predict.bamlss

BAMLSS Prediction
summary.bamlss

Summary for BAMLSS
stabsel

Stability selection.
smooth.construct.sr.smooth.spec

Random Effects P-Spline
response_name

sliceplot

Plot Slices of Bivariate Functions
boost2

Some Shortcuts
samplestats

Sampling Statistics
surv_transform

Survival Model Transformer Function
simJM

Simulate longitudinal and survival data for joint models
scale2

Scaling Vectors and Matrices
Golf

Prices of Used Cars Data
JAGS

Markov Chain Monte Carlo for BAMLSS using JAGS
Crazy

Crazy simulated data
bbfit

Batchwise Backfitting