Copy number of clones
Summary of junction frames of sequences
B cell clones of 8 individuals
sequences.getAnyJunctionFrame
Filter for in-frame or out-of-frame sequences
Combination of several IMGT output folders
Filter clones for their size
Detect amino acid mutations in V-, FR- or CDR-regions
Summary information of B cells of one individual
Amino acid distribution of sequences
Grouping sequences into clones
Compare richness or diversity of different samples
sequences.getAnyFunctionality
Filter for productive or unproductive sequences
Summary of amino acid sequences of B cells of one individual
Summary of functionality of sequences
True diversity of sequences
clones.filterJunctionFrame
Filter for in-frame/out-of-frame clones
Basic statistics on mutations of sequences
Base proportion nearby mutations
Advanced Analysis of B Cell Receptor Repertoire Data
Gini index of clones
Compare amino acid distribution of different samples
Summary of mutations cells
CDR3 length distribution of clones
clones.filterFunctionality
Filter for productive/unproductive clones
Data frame: clones of one individual
Dissimilarity/distance indices for gene usage data
Gene/gene combinations
Gene usage statistics
Summary of nucleotide sequences of B cells of one individual
Principal coordinate analysis (PCoA; multidimensional scaling [MDS]) of dissimilarity/distance indices
VH gene usage data
Summary of amino acid sequences of B cells of another individual
Compare gene usage of different samples
Dissimilarity/distance indices for sequence data
Shared clones between samples
Read IMGT/HighV-QUEST output files