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bruceR

BRoadly Useful Convenient and Efficient R functions that
BRing Users Concise and Elegant R data analyses.

This package includes easy-to-use functions for:

  1. Basic R programming (e.g., set working directory to the path of currently opened file; import/export data from/to files in any format; print tables to Microsoft Word);
  2. Multivariate computation (e.g., compute scale sums/means/... with reverse scoring);
  3. Reliability analyses and factor analyses (PCA, EFA, CFA);
  4. Descriptive statistics and correlation analyses;
  5. t-test, multi-factor analysis of variance (ANOVA), simple-effect analysis, and post-hoc multiple comparison;
  6. Tidy report of statistical models (to R Console and Microsoft Word);
  7. Mediation and moderation analyses (PROCESS);
  8. Additional toolbox for statistics and graphics.

Author

Han-Wu-Shuang (Bruce) Bao 包寒吴霜

Email: baohws@foxmail.com

Homepage: psychbruce.github.io

Citation

User Guide

NEWS (Changelog)

Chinese Documentation for bruceR: I. Overview

Chinese Documentation for bruceR: II. FAQ

Installation

## Method 1: Install from CRAN
install.packages("bruceR", dep=TRUE)  # dependencies=TRUE

## Method 2: Install from GitHub
install.packages("devtools")
devtools::install_github("psychbruce/bruceR", dep=TRUE, force=TRUE)

Tips:

  1. Good practice: restart RStudio before installation.
  2. Good practice: update R to the latest version (v4.0+).
  3. Good practice: install Rtools.exe (it is not an R package) on Windows system.
  4. If you see "Do you want to restart R prior to install?", choose "Yes" at the first time and then choose "No".
  5. If you see "Do you want to install from sources the package which needs compilation?", just choose "No".
  6. If you fail to install, please carefully read the warning messages and find out the R package(s) causing the failure, manually uninstall and reinstall these R package(s), and then retry the main installation.

Package Dependency

bruceR depends on many important R packages.

Loading bruceR by library(bruceR) will also load these R packages for you:

  • [Data]:

    • dplyr: Data manipulation and processing.
    • tidyr: Data cleaning and reshaping.
    • stringr: Toolbox for string operation (with regular expressions).
    • forcats: Toolbox for factor manipulation (for categorical variables).
    • data.table: Advanced data.frame with higher efficiency.
  • [Stat]:

    • emmeans: Estimates of marginal means and multiple contrasts.
    • effectsize: Estimates of effect sizes and standardized parameters.
    • performance: Estimates of regression models performance.
    • lmerTest: Tests of linear mixed effects models (LMM, also known as HLM and multilevel models).
  • [Plot]:

    • ggplot2: Data visualization.
    • ggtext: Markdown/HTML rich text format for ggplot2 (geoms and themes).
    • cowplot: Advanced toolbox for ggplot2 (arrange multiple plots and add labels).
    • see: Advanced toolbox for ggplot2 (geoms, scales, themes, and color palettes).

Main Functions in bruceR

  1. Basic R Programming

    • cc() (suggested)
    • set.wd() (alias: set_wd()) (suggested)
    • import(), export() (suggested)
    • pkg_depend(), pkg_install_suggested()
    • formatF(), formatN()
    • print_table()
    • Print(), Glue(), Run()
    • %^%
    • %notin%
    • %allin%, %anyin%, %nonein%, %partin%
  2. Multivariate Computation

    • add(), added() (suggested)
    • .sum(), .mean() (suggested)
    • SUM(), MEAN(), STD(), MODE(), COUNT(), CONSEC()
    • RECODE(), RESCALE()
    • LOOKUP()
  3. Reliability and Factor Analyses

    • Alpha()
    • EFA() / PCA()
    • CFA()
  4. Descriptive Statistics and Correlation Analyses

    • Describe()
    • Freq()
    • Corr()
    • cor_diff()
  5. T-Test, Multi-Factor ANOVA, Simple-Effect Analysis, and Post-Hoc Multiple Comparison

    • TTEST()
    • MANOVA()
    • EMMEANS()
  6. Tidy Report of Regression Models

    • model_summary() (suggested)
    • lavaan_summary()
    • GLM_summary()
    • HLM_summary()
    • HLM_ICC_rWG()
    • regress()
  7. Mediation and Moderation Analyses

    • PROCESS() (suggested)
    • med_summary()
  8. Additional Toolbox for Statistics and Graphics

    • grand_mean_center()
    • group_mean_center()
    • ccf_plot()
    • granger_test()
    • granger_causality()
    • theme_bruce()
    • show_colors()

Function Output

For some functions, the results can be saved to Microsoft Word using the file argument.

bruceR FunctionOutput: R ConsoleOutput: MS Word
print_table()√ (basic usage)
Describe()
Freq()
Corr()√ (suggested)
Alpha()(unnecessary)
EFA() / PCA()
CFA()
TTEST()
MANOVA()
EMMEANS()
PROCESS()√ (partial)
model_summary()√ (suggested)
med_summary()
lavaan_summary()
GLM_summary()
HLM_summary()
HLM_ICC_rWG()(unnecessary)
granger_test()
granger_causality()

Examples:

## Correlation analysis (and descriptive statistics)
Corr(airquality, file="cor.doc")

## Regression analysis
lm1 = lm(Temp ~ Month + Day, data=airquality)
lm2 = lm(Temp ~ Month + Day + Wind + Solar.R, data=airquality)
model_summary(list(lm1, lm2), file="reg.doc")
model_summary(list(lm1, lm2), std=TRUE, file="reg_std.doc")

Learn More From Help Pages

library(bruceR)

## Overview
help("bruceR")
help(bruceR)
?bruceR

## See help pages of functions
## (use `?function` or `help(function)`)
?cc
?add
?.mean
?set.wd
?import
?export
?Describe
?Freq
?Corr
?Alpha
?MEAN
?RECODE
?TTEST
?MANOVA
?EMMEANS
?PROCESS
?model_summary
?lavaan_summary
?GLM_summary
?HLM_summary
...

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Version

Install

install.packages('bruceR')

Monthly Downloads

3,212

Version

0.8.8

License

GPL-3

Maintainer

Han-Wu-Shuang Bao

Last Published

June 27th, 2022

Functions in bruceR (0.8.8)

CFA

Confirmatory Factor Analysis (CFA).
Freq

Frequency statistics.
EFA

Principal Component Analysis (PCA) and Exploratory Factor analysis (EFA).
Corr

Correlation analysis.
HLM_summary

Tidy report of HLM (lmer and glmer models).
Alpha

Reliability analysis (Cronbach's \(\alpha\) and McDonald's \(\omega\)).
Describe

Descriptive statistics.
EMMEANS

Simple-effect analysis and post-hoc multiple comparison.
HLM_ICC_rWG

Tidy report of HLM indices: ICC(1), ICC(2), and rWG/rWG(J).
GLM_summary

Tidy report of GLM (lm and glm models).
LOOKUP

Search, match, and look up values (like Excel's functions INDEX + MATCH).
MANOVA

Multi-factor ANOVA.
Run

Run code parsed from text.
RGB

A simple extension of rgb().
RECODE

Recode a variable.
RESCALE

Rescale a variable (e.g., from 5-point to 7-point).
dtime

Timer (compute time difference).
cor_diff

Test the difference between two correlations.
ccf_plot

Cross-correlation analysis.
cc

Split up a string (with separators) into a character vector.
granger_causality

Granger causality test (multivariate).
granger_test

Granger causality test (bivariate).
%partin%

A simple extension of %in%.
Print

Print strings with rich formats and colors.
export

Export data to a file (TXT, CSV, Excel, SPSS, Stata, ...) or clipboard.
formatF

Format numeric values.
%notin%

The opposite of %in%.
PROCESS

PROCESS for mediation and/or moderation analyses.
formula_paste

Paste a formula into a string.
grand_mean_center

Grand-mean centering.
%^%

Paste strings together.
group_mean_center

Group-mean centering.
TTEST

One-sample, independent-samples, and paired-samples t-test.
med_summary

Tidy report of mediation analysis.
theme_bruce

A nice ggplot2 theme that enables Markdown/HTML rich text.
show_colors

Show colors.
model_summary

Tidy report of regression models.
p

Compute p value.
bruceR-package

bruceR: BRoadly Useful Convenient and Efficient R functions
%allin%

A simple extension of %in%.
%anyin%

A simple extension of %in%.
add

Create, modify, and delete variables.
bruceR-demodata

Demo data.
pkg_depend

Check dependencies of R packages.
regress

Regression analysis.
import

Import data from a file (TXT, CSV, Excel, SPSS, Stata, ...) or clipboard.
rep_char

Repeat a character string for many times and paste them up.
lavaan_summary

Tidy report of lavaan model.
%%COMPUTE%%

Multivariate computation.
print_table

Print a three-line table (to R Console and Microsoft Word).
pkg_install_suggested

Install suggested R packages.
formatN

Format "1234" to "1,234".
%nonein%

A simple extension of %in%.
formula_expand

Expand all interaction terms in a formula.
scaler

Min-max scaling (min-max normalization).
set.wd

Set working directory to the path of currently opened file.