genomeDataRaw

10kb region from chr21 processed for 31 RNA-seq samples described in 
<a href="/link/genomeInfo?package=derfinder&version=1.6.4" rd-options="" data-mini-rdoc="derfinder::genomeInfo">genomeInfo</a>. The TopHat BAM files are included in the package and this 
is the output of <a href="/link/loadCoverage?package=derfinder&version=1.6.4" rd-options="" data-mini-rdoc="derfinder::loadCoverage">loadCoverage</a> applied to it with <code>cutoff=NULL</code>. 
For more information check the example of <a href="/link/loadCoverage?package=derfinder&version=1.6.4" rd-options="" data-mini-rdoc="derfinder::loadCoverage">loadCoverage</a>.

datasets

This package provides functions for annotation-agnostic
    differential expression analysis of RNA-seq data. Two implementations of
    the DER Finder approach are included in this package: (1) single base-level
    F-statistics and (2) DER identification at the expressed regions-level.
    The DER Finder approach can also be used to identify differentially bounded
    ChIP-seq peaks.

Leonardo Collado-Torres

derfinder

Annotation-agnostic differential expression analysis of RNA-seq data at
    base-pair resolution via the DER Finder approach

genomeDataRaw function

10kb region from chr21 processed for 31 RNA-seq samples described in 
<a href="genomeInfo" rd-options="">genomeInfo</a>. The TopHat BAM files are included in the package and this 
is the output of <a href="loadCoverage" rd-options="">loadCoverage</a> applied to it with <code>cutoff=NULL</code>. 
For more information check the example of <a href="loadCoverage" rd-options="">loadCoverage</a>.

genomeDataRaw: Genome samples processed data

Description

Arguments

References

See Also