DTI Fitting Procedure from FSL
Face Removal Mask
Eddy Current Correction
Enforce Either Qform or Sform is set
Register using FNIRT, but doing Affine Registration as well
Register using FNIRT
FNIRT help
Applies FLIRT then FNIRT transformations
FAST help
Apply Warp from FNIRT
Form clusters, report information about clusters
and/or perform cluster-based inference. Wrapper for cluster
Calculate Dice Coefficient of 2 Binary images
FSL Anatomical Processing Script
FSL applywarp help
Get FSL's Data Directory
Register using FLIRT
Tool to deface a structural T1w image.
FLIRT help
fsl_anat help
Scale Affine Matrix using avscale
fsladd Help
Get FSL's Standard Data Directory
Get FSL's Standard Data Directory
FSL Timeseries Plot using `fsl_tsplot` (not `tsplot`)
fslasin Help
Logical AND with Images using FSL
Apply Warp from FLIRT
Binarize Image using FSL
Arc Sine Transform Image using FSL
fslabs Help
Binarized Inverse Image using FSL
Arc Cosine Transform Image using FSL
FSL Command Wrapper
FSL Bias Correct
fslbinv Help
Resample an Image to Specific Voxel Size
FSL Copy Geometry
Smoothness Estimation using smoothest
Edge Strength Image using FSL
fsledge Help
fslcpgeom help
fslatan Help
Arc Tangent Transform Image using FSL
Quick Tabulation for logical images
Find FSL Version
Divide Images using FSL
Absolute Value Image using FSL
Image Center of Gravity (FSL)
Index Image using FSL
Wrapper for getting fsl help
fsldiv Help
Add Images using FSL
Image Mean Entropy
fslacos Help
Dilate image using FSL
Erode image using FSL
Use FSL's Brain Extraction Tool (BET)
Help for FSL BET
Get FSL's Directory
FSL Change file type
Get NIfTI header using FSL
Fill image holes with dilation then erosion
fslbin Help
fslchfiletype help
Get min/max of an image
Register EPI images to Structural image
Fill image holes
fslfill Help
fslcos Help
fslindex Help
Cosine Transform Image using FSL
Exponentiate Image using FSL
FSL Orientation Wrappers
Parse FSL Header
fslrecip Help
fslmask Help
fslexp Help
Image Mean
Wrapper for FSL Get Orientation
fslsqr Help
Modulus Remainder of 2 Images using FSL
fslerode Help
FSLhd help
FSL Maths Help
Image Standard Deviation
Add Random Uniform Noise Image using FSL
fslrand Help
Merge images using FSL
FSL Split help
Square Image using FSL
Multiply Images using FSL
Square Root Image using FSL
Get value from FSL header
FSL Maths
fslthresh Help
Sine Transform Image using FSL
Threshold an image
FSLMerge help
FSL Orient
fslrandn Help
Perform OR/Union operation on Images using FSL
fslorient help
Add Random Standard Gaussian Noise Image using FSL
FSL Slice Timing Correction
Get range of an image
fsllog Help
fslnanm Help
fslsmooth Help
fslmul Help
Replace NaNs in Image using FSL
fslsin Help
Log Transform Image using FSL
Mask image using FSL
Gaussian smooth image using FSL
Reciprocal Image using FSL
FSL Stats Help
Subtract Images using FSL
fsltan Help
fslval help
Mask NaNs in Image using FSL
Smooth Image Within a Mask Only
FSL Robust Field of View Help
Tangent Transform Image using FSL
Determine extension of image based on FSLOUTPUTTYPE
fslnan Help
Determine FSL output type
FSL ROI
fslrem Help
Extract Image intent_p2 attribute
Perform XOR/Exclusive Or operation on Images using FSL
Extract Image intent_p3 attribute
FSL Swap Dimensions
Split images using FSL
fslswapdim help
Extract NIfTI 3D Image Orientation
Extract Image pixdim attribute
Extract Image sizeof_hdr attribute
Extract Image slice_code attribute
fslsub Help
Probabilistic diffusion tractography with multiple fibre orientations
Parse output from avscale
Subsample image by factor of 2
Create command declaring FSLDIR
Get Q and S Forms of orientation matrix
Face Removal Mask using "Quickshear Defacing for Neuroimages"
(Schimke et al. 2011)
FSLView help
Logical check if FSL is accessible
Reorient an Image to RPI orientation
Convert a Transformation
Extract Image magic attribute
Open image in FSLView
Run MELODIC ICA
Extract Image intent_code attribute
MCFLIRT help
Run FIRST All
FSL Orient to MNI
Reverse Reorientation an Image to RPI orientation
Extract Image scl_slope attribute
fslreorient2std help
FSL Motion Correction
Read FSL Transformation
FSL SUSAN noise reduction
Mid-Sagittal Plane Alignment
Read NIfTI file reoriented to RPI
Extract Image slice_end attribute
Extract Image slice_duration attribute
Extract Image qform_code attribute
MELODIC help
Extract Image slice_start attribute
Construct MNI Filename
Run FIRST All Help
Extract Image sform_code attribute
Extract Image vox_offset attribute
FSL Stats
FSL Sum
topup - calling FSL topup
FSL Robust Field of View
Extract Image intent_name attribute
Extract Image scl_inter attribute
Read MNI Filename
MRI Defacer
FSL Volume in mL (or cubic centimeters)
fslsub2 Help
fslsqrt Help
Image Volume
Extract Image intent_p1 attribute
Extract Image toffset attribute
FSL SUSAN Help
Bayesian Estimation of Diffusion Parameters
Obtained using Sampling Techniques with Crossing Fibers
Extract Image cal.min attribute
Extract Image aux.file attribute
applytopup - calling FSL applytopup
Extract Image descrip attribute
Determine of Q and S forms are consistent
Extract Image cal.max attribute
Extract Image datatype attribute
Wrapper for getForms with filename
Extract Image data_type attribute
Extract Image bitpix attribute
FSL FAST
Download FSL
Extract Image dim_ attribute
Eddy Current Correction