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genoPlotR (version 0.7)

Plot publication-grade gene and genome maps

Description

genoPlotR draws gene or genome maps and comparisons between these, in a publication-grade manner. Starting from simple, common files, it will draw postscript or pdf files that can be sent as such to journals

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Version

Install

install.packages('genoPlotR')

Monthly Downloads

416

Version

0.7

License

GPL (>= 2)

Maintainer

Lionel Guy

Last Published

May 3rd, 2011

Functions in genoPlotR (0.7)

apply_color_scheme

Apply a color scheme
dna_seg

DNA segment (dna_seg) class and class functions
annotation

Annotation class and class functions
chrY_subseg

Comparisons of subsegments of the Y chromosome in human and chimp
auto_annotate

Auto-annotate dna_segs
barto

Comparison of 4 Bartonella genomes
reverse

Reverse objects
c.dna_seg

Concatenate dna_seg objects
human_nt

Human-readable nucleotide scale
mauve_bbone

Mauve backbone of 4 Bartonella genomes
three_genes

Three genes data set
artemisColors

Artemis Colors
middle

Middles of a dna_seg
trim

Trimming data frames or more complex objects with >= 2 numeric columns
range.dna_seg

Range calculation
seg_plot

seg_plot class and class functions
read_functions

Reading functions
gene_types

Gene types
comparison

Comparison class and class functions
plot_gene_map

Plot gene and genome maps
genoPlotR-package

genoPlotR - a R framework to produce publication-grade maps of genes and genomes.