haploReconstruct (version 0.1.2)

summary,hbr-method: Method to summarize information of reconstructed haplotype-blocks

Description

The method summarizes information of the reconstructed haplotype-blocks for a chromosome.

Usage

"summary"(object, min.marker = 1)

Arguments

object

object of class hbr containing the results of reconstructed haplotype blocks to be summarized.

min.marker

numeric specifying the minimum number of markers a haplotype-block to be reported. NOTE: IDs of haplotype-blocks in the provided summary are identical to the IDs of the previously identified blocks.

Value

data.table with row entries for each reconstructed haplotype-block and columns for: chr (chromosome), id (numbering of selected blocks), n.marker (number of markers in the reconstructed block), spos, epos (starting and end position of the block), len.pos (length of the block in bp), MperMb (number of markers per Mb), swin, ewin (starting and end window of the block)

Details

The method operates on hbr objects and summarizes information of reconstructed haplotype-blocks

See Also

hbr ex_dat plot.hbr plot_cluster_trajectories plot_marker_trajectories map rev_map markers plot_hbr_freq inspect_window inspect_window_PCA inspect_window_avLink inspect_window_dbScan number_hbr