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hlaR (version 1.0.0)

Tools for HLA Data

Description

A streamlined tool for eplet analysis of donor and recipient HLA (human leukocyte antigen) mismatch. Messy, low-resolution HLA typing data is cleaned, and imputed to high-resolution using the NMDP (National Marrow Donor Program) haplotype reference database . High resolution data is analyzed for overall or single antigen eplet mismatch using a reference table (currently supporting 'HLAMatchMaker' versions 2 and 3). Data can enter or exit the workflow at different points depending on the user's aims and initial data quality.

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Version

Install

install.packages('hlaR')

Monthly Downloads

205

Version

1.0.0

License

MIT + file LICENSE

Maintainer

Joan Zhang

Last Published

January 31st, 2023

Functions in hlaR (1.0.0)

CalEpletMHCI

Calculate class I HLA eplet mismatch
CalAlleleTopN

topN most frequent HLA alleles
CleanAllele

Clean messy HLA typing data
CountAlleleMism

Count HLA mismatch at the allele level
utils

Basic functions
CalAlleleMismFreq

Evaluate the frequency of specific allele mismatches
CalEpletMHCII

Calculate class II HLA eplet mismatch.
EvalAlleleMism

Evaluate mismatched alleles
ImputeHaplo

Imputation