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iterativeBMA (version 1.30.0)

The Iterative Bayesian Model Averaging (BMA) algorithm

Description

The iterative Bayesian Model Averaging (BMA) algorithm is a variable selection and classification algorithm with an application of classifying 2-class microarray samples, as described in Yeung, Bumgarner and Raftery (Bioinformatics 2005, 21: 2394-2402).

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Version

Version

1.30.0

License

GPL (>= 2)

Maintainer

Ka Yeung

Last Published

February 15th, 2017

Functions in iterativeBMA (1.30.0)

BssWssFast

Between-groups sum-of-squares to within-groups sum-of-squares ratio
trainData

Sample Training Data for the Iterative BMA Algorithm
iterateBMAsurv.train.wrapper

Iterative Bayesian Model Averaging: training
imageplot.iterate.bma.surv

An image plot visualization tool
testData

Sample Test Data for the Iterative BMA Algorithm
iterativeBMAsurv-internal

Internal functions for iterativeBMAsurv
imageplot.iterate.bma

An image plot visualization tool
printTopGenes

Write a training set including the top-ranked G variables from a sorted matrix to file
testClass

Sample Test Data for the Iterative BMA Algorithm
testCens

Sample Test Data for the Iterative BMA Algorithm for Survival Analysis
predictiveAssessCategory

Risk Groups: assignment of patient test samples
iterativeBMA-internal

Internal functions for iterativeBMA
trainCens

Sample Training Data for the Iterative BMA Algorithm for Survival Analysis
iterateBMAglm.wrapper

Iterative Bayesian Model Averaging
trainClass

Sample Training Data for the Iterative BMA Algorithm
testSurv

Sample Test Data for the Iterative BMA Algorithm for Survival Analysis
singleGeneCoxph

Univariate Cox Proportional Hazards Model for selecting top log-ranked predicitve variables
iterateBMAglm.train.predict.test

Iterative Bayesian Model Averaging: training, prediction and testing
iterateBMAsurv.train.predict.assess

Iterative Bayesian Model Averaging: training, prediction, assessment
brier.score

Brier Score: assessment of prediction accuracy
bma.predict

Predicted Probabilities from Bayesian Model Averaging
trainSurv

Sample Training Data for the Iterative BMA Algorithm for Survival Analysis
iterateBMAglm.train

Iterative Bayesian Model Averaging: training step
iterateBMAglm.train.predict

Iterative Bayesian Model Averaging: training and prediction
iterativeBMA-package

The Iterative Bayesian Model Averaging (BMA) algorithm
iterativeBMAsurv-package

The Iterative Bayesian Model Averaging (BMA) algorithm for survival analysis
iterateBMAsurv.train

Iterative Bayesian Model Averaging: training
predictBicSurv

Predicted patient risk scores from iterative Bayesian Model Averaging
crossVal

Cross Validation for Iterative Bayesian Model Averaging