junco

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install.packages('junco')

Monthly Downloads

657

Version

0.1.2

License

Apache License (>= 2)

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Pull Requests

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Repository

https://github.com/johnsonandjohnson/junco

Homepage

https://johnsonandjohnson.github.io/junco/

Maintainer

Gabriel Becker

Last Published

December 20th, 2025

Functions in junco (0.1.2)

a_freq_subcol_j

Analysis function count and percentage with extra column-subsetting in selected columns (controlled by subcol_* arguments)

a_proportion_ci_factor

Formatted Analysis Function For Proportion Confidence Interval for Factor

a_freq_resp_var_j

Analysis Function for Response Variables

a_summarize_aval_chg_diff_j

Analysis function 3-column presentation

a_eair100_j

Exposure-Adjusted Incidence Rate

a_proportion_ci_logical

Formatted Analysis Function For Proportion Confidence Interval for Logical

a_freq_j

Analysis/statistical function for count and percentage in core columns and (optional) relative risk columns

a_patyrs_j

Patient years exposure

a_maxlev

Calculate Count and Percentage of the Maximum Level of an Ordered Factor per Subject.

a_freq_combos_j

Analysis function count and percentage in column design controlled by combosdf

ac_blank_line

Analysis and Content Summary Function Producing Blank Line

c_proportion_logical

c_function for proportion of TRUE in logical vector

build_formula

Building Model Formula

assert_rbmi

Assert that rbmi package is installed

bspt_pruner

Pruning Function for pruning based on a fraction and/or a difference from the control arm

analyze_values

Shortcut Layout Function for Standard Continuous Variable Analysis

a_summarize_ex_j

Tabulation for Exposure Tables

create_colspan_map

Creation of Column Spanning Mapping Dataframe

create_colspan_var

Creation of Column Spanning Variables

cond_rm_facets

Conditional Removal of Facets

count and fraction related formatting functions

Formatting functions for count and fraction, and for count denominator and fraction values

c_row_counts

Simple Content Row Function to Count Rows

count_pruner

Count Pruner

default_str_map

Default String Mapping for Special Characters

do_exclude_split

Predicate to Check if Split Should be Excluded

a_two_tier

Two Tier Analysis Function

h_extract_coxreg_multivar

Extract Estimates from Multivariate Cox Regression Model Fit Object

h_get_covariate_parts

Extraction of Covariate Parts from Character Vector

cmp_cfun

Summary Analysis Function for Compliance Columns

cmp_post_fun

Split Function for Compliance Columns

c_row_counts_alt

Simple Content Row Function to Count Rows from Alternative Data

export_graph_as_docx

export_as_docx_j

Export a VTableTree or a listing_df object into docx

get_visit_levels

Get Visit Levels in Order Defined by Numeric Version

get_titles_from_file

Get Titles/Footers For Table From Sources

check_wrap_nobreak

Check Word Wrapping

listing_column_widths

Define Column Widths

default_stats_formats_labels

Get default statistical methods and their associated formats, labels, and indent modifiers

cmhrms

Cochran-Mantel-Haenszel Row Mean Scores test

coxph_hr

Workaround statistics function to add HR with CI

jjcsformat_xx

Utility for specifying custom formats

jjcs_num_formats

Numeric Formatting Function

make_combo_splitfun

Split Function Helper

column_stats

Statistics within the column space

jj_complex_scorefun

Complex Scoring Function

.unlist_keep_nulls

Custom unlist function

event_free

Workaround statistics function to time point survival estimate with CI

prop_table_afun

Formatted Analysis Function for Proportion Analysis

lsmeans_wide_cfun

Content Row Analysis Function for LS Means Wide Table Layouts

lsmeans_helpers

Helpers for Processing Least Square Means

make_rbmi_cluster

Create a rbmi ready cluster

get_mmrm_lsmeans

Extract Least Square Means from MMRM

get_ref_info

Obtain Reference Information for a Global Reference Group

kaplan_meier

Survival time analysis

keep_non_null_rows

Pruning Function to accommodate removal of completely NULL rows within a table

proposal_argument_convention

Standard Arguments

rbmi_ancova_single

Implements an Analysis of Covariance (ANCOVA)

h_get_design_mat

Helper Function to Create Logical Design Matrix from Factor Variable

h_get_trtvar_refpath

Get Treatment Variable Reference Path

resp01_a_comp_stat_factor

Formatted Analysis Function for Comparative Statistic in Response Tables (RESP01)

resp01_a_comp_stat_logical

Formatted Analysis Function for Comparative Statistic in Response Tables (RESP01)

rbmi_mmrm

MMRM Analysis for Imputed Datasets

resp01_split_fun_fct

Split Function Factory for the Response Tables (RESP01)

no_data_to_report_str

No Data to Report String

odds_ratio

Odds ratio estimation

response_by_var

Count denom fraction statistic

Analysis of Covariance

Analyse Multiple Imputed Datasets

safe_prune_table

Safely Prune Table With Empty Table Message If Needed

find_missing_chg_after_avisit

Helper for Finding AVISIT after which CHG are all Missing

fit_ancova

ANCOVA Analysis

insert_blank_line

Insertion of Blank Lines in a Layout

inches_to_spaces

Conversion of inches to spaces.

labels

Adding Labels To Variables For Model

par_lapply

Parallelise Lapply

remove_col_count

Removal of Unwanted Column Counts

remove_rows

Pruning function to remove specific rows of a table regardless of counts

pad_in_rows_fct

Function Factory to Create Padded In Rows Content

leftside

Extract the left-hand side of a formula

s_proportion_factor

s_function for proportion of factor levels

tabulate_rbmi

Tabulation of RBMI Results

s_ancova_j

Junco Extended ANCOVA Function

summarize_lsmeans_wide

Layout Generating Function for LS Means Wide Table Layouts

summarize_mmrm

Dynamic tabulation of MMRM results with tables

tefos03_first_post_fun

First Level Column Split Function for TEFOS03 (mmy) Table Layout

string_to_title

Title Case Conversion

summarize_coxreg_multivar

Layout Generating Function for TEFOS03 and Related Cox Regression Layouts

h_odds_ratio

Helper functions for odds ratio estimation

rbmi_mmrm_single_info

Extract Single Visit Information from a Fitted MMRM for Multiple Imputation Analysis

prop_post_fun

Split Function for Proportion Analysis Columns

resp01_acfun

Formatted Analysis and Content Summary Function for Response Tables (RESP01)

rbmi_pool

Pool analysis results obtained from the imputed datasets

prop_ratio_cmh

Relative Risk CMH Statistic

tefos03_second_split_fun_fct

Second Level Column Split Function Factory for TEFOS03 (mmy) Table Layout

lsmeans_wide_second_split_fun_fct

Second Level Column Split for LS Means Wide Table Layouts

h_summarize_mmrm

Helper Function to Fit the MMRM and Return LS Mean Estimates and Contrasts

tefos03_afun

Analysis Function for TEFOS03 and Related Table Layouts

lsmeans_wide_first_split_fun_fct

First Level Column Split for LS Means Wide Table Layouts

real_add_overall_facet

Add Overall Facet

prop_diff

Proportion difference estimation

resp01_counts_cfun

Content Row Function for Counts of Subgroups in Response Tables (RESP01)

prop_diff_test

Difference test for two proportions

a_relative_risk

Relative risk estimation

tt_to_tbldf

Create TableTree as DataFrame via gentlg

short_split_result

Shortcut for Creating Custom Column Splits

tt_to_tlgrtf

TableTree to .rtf Conversion

a_summarize_ancova_j

ANCOVA Summary Function

tabulate_lsmeans

Tabulation of Least Square Means Results

s_proportion_logical

s_function for proportion of TRUE in logical vector

summarize_row_counts

Layout Creating Function Adding Row Counts

smart_colwidths_1page

Colwidths for all columns to be forced on one page.

tt_to_flextable_j

Convert a VTableTree or a listing_df object to a flextable

tidy.pool

Helper method (for broom::tidy()) to prepare a data frame from an pool rbmi object containing the LS means and contrasts and multiple visits

tern_default_stats_formats_labels

Get default statistical methods and their associated formats, labels, and indent modifiers

theme_docx_default_j

Obtain the default theme for the docx

var_relabel_list

Relabel Variables in a Dataset