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mutoss (version 0.1-10)
Unified Multiple Testing Procedures
Description
The Mutoss package and accompanying mutossGUI package are designed to ease the application and comparison of multiple hypothesis testing procedures.
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Install
install.packages('mutoss')
Monthly Downloads
3,593
Version
0.1-10
License
GPL
Maintainer
Kornelius Rohmeyer
Last Published
April 2nd, 2015
Functions in mutoss (0.1-10)
Search functions
BlaRoq
Blanchard-Roquain (2008) step-up Procedure for arbitrary dependent p-Values...
SUD
A general step-up-down procedure.
augmentation
Wrapper function to the augmentation methods of the multtest package.
bonferroni
Bonferroni correction...
Mutoss-class
Class Mutoss
linearStepUp
Linear Step Up Service Function...
hommel
Hommel's (1988) step-up-procedure
gatherParameters
Extracts the parameters from the simulation()-Object
ABH_pi0_est
Lowest Slope Line (LSL) method of Hochberg and Benjamini for estimating pi0
mu.test.class
Test for compatible classes for comparison...
gao
Xin Gao's non-parametric multiple test procedure is applied to Data.
pValuesPlot
A function plotting p-values...
fisher22.marginal
Fisher (2x2) table association analysis for calculating all marginal p-values...
Qvalue
Storey's (2001) q-value Procedure...
tukey.wrapper
Tukey HSD test and simultaneous confidence intervals for all pairs comparisons...
mu.test.name
Tests if all hypotheses have the same names.
pval2qval
Strimmer et al.'s fdrtool-based q-values
calculateBetaAdjustment
Calculating the beta adjustment factor for the asymptotically optimal rejection curve.
BL
Benjamini-Liu (1999) step-down procedure
paired.marginal
Marginal paired two sample test
reject
reject
snk
Student - Newman - Keuls rejective test procedure.
ftest.marginal
Marginal F test
onesamp.marginal
Marginal one sample test
pval2locfdr
Strimmer et al.'s fdrtool-based local fdr
multcomp.wrapper
Simultaneous confidence intervals for arbitrary parametric contrasts in unbalanced one-way layouts.
adaptiveSTS
Storey-Taylor-Siegmund (2004) adaptive step-up procedure
SU
A general step-up procedure.
mutoss.models
Mutoss Models
notterman
Notterman data set
SD
A general step-down procedure.
hochberg
Hochberg (1988) step-up procedure
BR_pi0_est
Estimate of pi0 using the one-step Blanchard-Roquain procedure
ranktruncated
Rank truncated p-Value procedure...
mu.test.type
Tests that different procedures use the same error types.
nparcomp.wrapper
Simultaneous confidence intervals for relative contrast effects...
mutoss.apply
Applies a function to a Mutoss object.
multiple.down
Benjamini-Krieger-Yekutieli (2006) Multi-Stage Step-Down
adaptiveBH
Benjamini-Hochberg (2000) adaptive linear step-up procedure
gatherStatistics
Gathering statistics from simulation()-Object
fisher23_fast
Fisher-type (2x3) table association analysis for calculating one (marginal) p-value...
regwq
REGWQ - Ryan / Einot and Gabriel / Welsch test procedure...
BY
Benjamini-Yekutieli (2001) step-up procedure
jointCDF.orderedUnif
Joint cumulative distribution function of order statistics of n iid. U(0,1)-distributed random variables
storey_pi0_est
Storey-Taylor-Siegmund estimation of pi0 (finite sample version)
ErrorControl-class
Class ErrorControl
fisher23.marginal
Fisher-type (2x3) table association analysis for calculating all marginal p-values...
sidak
Sidak correction
multiple.down.adjust
A service function used by multiple...
mutoss.plotCI
mutoss.plotCI
TSBKY_pi0_est
Two-step estimation method of Benjamini, Krieger and Yekutieli for estimating pi0
BH
Benjamini-Hochberg (1995) linear step-up procedure
MutossMethod-class
Class MutossMethod
adjPValuesPlot
A function plotting adjusted p-values...
compareMutoss
Functions for comparing outputs of different procedures.
holm
Holm's (1979) step-down-procedure
twosamp.marginal
Marginal two sample test
oracleBH
Bejamini-Hochberg (2000) oracle linear step-up Procedure...
twostageBR
Blanchard-Roquain (2009) 2-stage adaptive step-up...
requireLibrary
Tries to load a package.
two.stage
A p-value procedure which controls the FDR for independent test statistics.
fisher22_fast
Fisher (2x2) table association analysis for calculating one (marginal) p-value...
indepBR
Blanchard-Roquain (2009) 1-stage adaptive step-up
SidakSD
Sidak-like (1987) step-down procedure
simulation
Simulation studies
nparcomp
Simultaneous confidence intervals for relative contrast effects...
mu.test.rates
Tests that different procedures used the same error rates.
printRejected
Internal MuTossProjekt-Function
aorc
Step-up-down test based on the asymptotically optimal rejection curve.
mu.test.same.data
Tests if the same pvalues were used by different procedures.
rom
Rom's (1990) step-up-procedure.