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pam (version 2.0.0)

Fast and Efficient Processing of PAM Data

Description

Processing Chlorophyll Fluorescence & P700 Absorbance data. Four models are provided for the regression of Pi curves, which can be compared with each other in order to select the most suitable model for the data set. Control plots ensure the successful verification of each regression. Bundled output of alpha, ETRmax, Ik etc. enables fast and reliable further processing of the data.

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Version

Install

install.packages('pam')

Monthly Downloads

624

Version

2.0.0

License

GPL-3

Issues

0

Pull Requests

0

Stars

4

Forks

1

Maintainer

Julien Böhm

Last Published

February 1st, 2026

Functions in pam (2.0.0)

platt_modified

Platt Model Modification
platt_default_start_value_beta

Default start value
read_universal_data

Read and Process Universal PAM Data
plot_control

Plot Control
read_dual_pam_data

Read and Process DualPAM Data
platt_generate_regression_ETR_I

Platt Regression for ETR I
platt_generate_regression_ETR_II

Platt Regression for ETR II
platt_default_start_value_ps

Default start value
vollenweider_default_start_value_a

Default start value
read_junior_pam_data

Read and Process Junior PAM Data
vollenweider_default_start_value_alpha

Default start value
vollenweider_generate_regression_ETR_II

Vollenweider Regression for ETR II
walsby_default_start_value_alpha

Default start value
vollenweider_default_start_value_n

Default start value
walsby_default_start_value_etr_max

Default start value
walsby_modified

Walsby Model Modification
vollenweider_modified

Vollenweider Model Modification
walsby_generate_regression_ETR_II

Walsby Regression for ETR II
vollenweider_default_start_value_pmax

Default start value
vollenweider_generate_regression_ETR_I

Vollenweider Regression for ETR I
walsby_generate_regression_ETR_I

Walsby Regression for ETR I
write_model_result_csv

Write Model Result CSV
walsby_default_start_value_beta

Default start value
eilers_peeters_modified

Eilers & Peeters Model Modification
compare_regression_models_ETR_II

Compare Regression Models for ETR II
eilers_peeters_generate_regression_ETR_II

Eilers-Peeters Regression for ETR II
platt_default_start_value_alpha

Default start value
eilers_peeters_generate_regression_ETR_I

Eilers-Peeters Regression for ETR I
compare_regression_models_ETR_I

Compare Regression Models for ETR I
combo_plot_control

Combined ETR Plot and Summary Table
eilers_peeters_default_start_value_c

Default start value
eilers_peeters_default_start_value_b

Default start value
eilers_peeters_default_start_value_a

Default start value