pancor
Installation
devtools::install_github("xuzhougeng/pancor")
library(pancor)Usage:
test dasta
data("pancancer_small")
df <- pancor(pancancer_small, "METTL3", "SETD2")
ggpancor(df)ggcorplot(pancancer_small, "METTL3","SETD2", cor.test.method = "pearson")If you want to use the full data, you need download our preprocessed Rdata with getExprSet
getExprSet("pancancer_mRNA_exprSet.Rdata")Then load this data to environment
load("pancancer_mRNA_exprSet.Rdata")The following analysis is same as previous
df <- pancor(mRNA_exprSet, "METTL3", "SETD2")
ggpancor(df)
ggcorplot(mRNA_exprSet, "METTL3","SETD2", cor.test.method = "pearson")