pbatR v2.2-13

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Pedigree/Family-Based Genetic Association Tests Analysis and Power

This R package provides power calculations via internal simulation methods. The package also provides a frontend to the now abandoned PBAT program (developed by Christoph Lange), and reads in the corresponding output and displays results and figures when appropriate. The license of this R package itself is GPL. However, to have the program interact with the PBAT program for some functionality of the R package, users must additionally obtain the PBAT program from Christoph Lange, and accept his license. Both the data analysis and power calculations have command line and graphical interfaces using tcltk.

Functions in pbatR

Name Description
phe Phenotype Object
clean Cleaning pbat(), pbat.last(), pbat.m() output.
cluster Cluster result functions
affectionPhe Affection Phenotype Object
pbat.help Help and Reporting Information
generic `pbat' Object Generic Routines
c2bat C2BAT
pbat.status PBAT Status of Run
write.pbat Saving `pbat' Object
pbat.set Set Pbat Parameters
cped Phenotype Object
pbat.work pbatRwork Temp Directory
ped Pedigree Object
obfuscate Obfuscating Pedigree and Phenotype Files
top top
pbat PBAT Graphical and Command Line Interface
power Power Exploration
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Details

Date 2018-04-16
License GPL
URL http://sites.google.com/site/thomashoffmannproject/ http://bioinformatics.oxfordjournals.org/cgi/content/short/22/24/3103
LazyLoad true
NeedsCompilation yes
Packaged 2018-04-17 17:28:42 UTC; tom
Repository CRAN
Date/Publication 2018-04-20 03:51:52 UTC

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