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pbatR (version 2.2-13)

Pedigree/Family-Based Genetic Association Tests Analysis and Power

Description

This R package provides power calculations via internal simulation methods. The package also provides a frontend to the now abandoned PBAT program (developed by Christoph Lange), and reads in the corresponding output and displays results and figures when appropriate. The license of this R package itself is GPL. However, to have the program interact with the PBAT program for some functionality of the R package, users must additionally obtain the PBAT program from Christoph Lange, and accept his license. Both the data analysis and power calculations have command line and graphical interfaces using tcltk.

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Version

Install

install.packages('pbatR')

Monthly Downloads

371

Version

2.2-13

License

GPL

Maintainer

Thomas Hoffmann

Last Published

April 20th, 2018

Functions in pbatR (2.2-13)

phe

Phenotype Object
clean

Cleaning pbat(), pbat.last(), pbat.m() output.
cluster

Cluster result functions
affectionPhe

Affection Phenotype Object
pbat.help

Help and Reporting Information
generic

`pbat' Object Generic Routines
c2bat

C2BAT
pbat.status

PBAT Status of Run
write.pbat

Saving `pbat' Object
pbat.set

Set Pbat Parameters
cped

Phenotype Object
pbat.work

pbatRwork Temp Directory
ped

Pedigree Object
obfuscate

Obfuscating Pedigree and Phenotype Files
top

top
pbat

PBAT Graphical and Command Line Interface
power

Power Exploration