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provenance (version 0.2)

Statistical Toolbox for Sedimentary Provenance Analysis

Description

Bundles a number of established statistical methods to facilitate the visual interpretation of large datasets in sedimentary geology. Includes functionality for adaptive kernel density estimation, multidimensional scaling, generalised procrustes analysis and individual differences scaling using a variety of dissimilarity measures. Univariate provenance proxies, such as single-grain ages or (isotopic) compositions are compared with the Kolmogorov-Smirnov dissimilarity and Sircombe-Hazelton L2-norm. Categorical provenance proxies, such as mineralogical, petrographic or chemical compositions are compared with the Aitchison and Bray-Curtis distances.

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Version

Install

install.packages('provenance')

Monthly Downloads

207

Version

0.2

License

GPL-2

Maintainer

Pieter Vermeesch

Last Published

June 5th, 2015

Functions in provenance (0.2)

plot.KDE

Plot a kernel density estimate
get.n

Calculate the number of grains required to achieve a desired level of sampling resolution
plot.INDSCAL

Plot an INDSCAL group configuration and source weights
indscal

Individual Differences Scaling of provenance data
summaryplot

Joint plot of several provenance datasets
get.f

Calculate the largest fraction that is likely to be missed
plot.GPA

Plot a Procrustes configuration
get.p

Calculate the probability of missing a given population fraction
clr

Centred logratio transformation
getPCA

Principal Component Analysis
read.HMdata

Read a .csv file with categorical data
getKDE

Create a kernel density estimate
dist

Calculate the dissimilarity matrix between two DZdata or HMdata datasets
botev

Compute the optimal kernel bandwidth
plot.HMdata

Plot a pie chart
getKDEs

Generate an object of class KDEs
plot.DZdata

Plot continuous data as histograms or cumulative age distributions
subset

Get a subset of a provenance dataset
KS.dist

Kolmogorov-Smirnov distance
read.DZdata

Read a .csv file with continuous (detrital zircon) data
ternaryplot

Plot a ternary diagram
getMDS

Multidimensional Scaling
SH.dist

Sircombe and Hazelton distance
plot.MDS

Plot an MDS configuration
plot.PCA

Compositional biplot
procrustes

Generalised Procrustes Analysis (GPA)