survival v2.42-3

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Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Functions in survival

Name Description
aml Acute Myelogenous Leukemia survival data
cipoisson Confidence limits for the Poisson
coxph.object Proportional Hazards Regression Object
coxph.wtest Compute a quadratic form
clogit Conditional logistic regression
model.frame.coxph Model.frame method for coxph objects
model.matrix.coxph Model.matrix method for coxph models
nwtco Data from the National Wilm's Tumor Study
ovarian Ovarian Cancer Survival Data
print.summary.coxph Print method for summary.coxph objects
aeqSurv Adjudicate near ties in a Surv object
agreg.fit Cox model fitting functions
print.summary.survexp Print Survexp Summary
cgd Chronic Granulotomous Disease data
cgd0 Chronic Granulotomous Disease data
solder Data from a soldering experiment
kidney Kidney catheter data
is.ratetable Verify that an object is of class ratetable.
myeloid Acute myeloid leukemia
stanford2 More Stanford Heart Transplant data
neardate Find the index of the closest value in data set 2, for each entry in data set one.
plot.survfit Plot method for survfit objects
bladder Bladder Cancer Recurrences
cch Fits proportional hazards regression model to case-cohort data
summary.aareg Summarize an aareg fit
summary.coxph Summary method for Cox models
predict.coxph Predictions for a Cox model
cluster Identify clusters.
survfit.object Survival Curve Object
survfitcoxph.fit A direct interface to the `computational engine' of survfit.coxph
colon Chemotherapy for Stage B/C colon cancer
attrassign Create new-style "assign" attribute
survreg.distributions Parametric Survival Distributions
Surv Create a Survival Object
quantile.survfit Quantiles from a survfit object
dsurvreg Distributions available in survreg.
aareg Aalen's additive regression model for censored data
survreg.object Parametric Survival Model Object
uspop2 Projected US Population
vcov.coxph Variance-covariance matrix
cox.zph Test the Proportional Hazards Assumption of a Cox Regression
ratetable Rate table structure
coxph Fit Proportional Hazards Regression Model
retinopathy Diabetic Retinopathy
residuals.survreg Compute Residuals for `survreg' Objects
basehaz Alias for the survfit function
frailty Random effects terms
finegray Create data for a Fine-Gray model
flchain Assay of serum free light chain for 7874 subjects.
survSplit Split a survival data set at specified times
logan Data from the 1972-78 GSS data used by Logan
survdiff Test Survival Curve Differences
survexp.object Expected Survival Curve Object
lung NCCTG Lung Cancer Data
predict.survreg Predicted Values for a `survreg' Object
mgus Monoclonal gammapothy data
mgus2 Monoclonal gammapothy data
ratetables Census Data Sets for the Expected Survival and Person Years Functions
coxph.control Ancillary arguments for controlling coxph fits
print.aareg Print an aareg object
tmerge Time based merge for survival data
ratetableDate Convert date objects to ratetable form
genfan Generator fans
coxph.detail Details of a Cox Model Fit
tobin Tobin's Tobit data
pbc Mayo Clinic Primary Biliary Cirrhosis Data
pbcseq Mayo Clinic Primary Biliary Cirrhosis, sequential data
heart Stanford Heart Transplant data
pspline Smoothing splines using a pspline basis
lines.survfit Add Lines or Points to a Survival Plot
rats Rat treatment data from Mantel et al
plot.aareg Plot an aareg object.
logLik.coxph logLik method for a Cox model
pyears Person Years
statefig Draw a state space figure.
rats2 Rat data from Gail et al.
plot.cox.zph Graphical Test of Proportional Hazards
residuals.coxph Calculate Residuals for a `coxph' Fit
print.survfit Print a Short Summary of a Survival Curve
strata Identify Stratification Variables
print.summary.survfit Print Survfit Summary
rhDNase rhDNASE data set
ridge Ridge regression
summary.survfit Summary of a Survival Curve
survConcordance Compute a concordance measure.
survfit.formula Compute a Survival Curve for Censored Data
survfit.matrix Create Aalen-Johansen estimates of multi-state survival from a matrix of hazards.
summary.pyears Summary function for pyears objecs
survreg Regression for a Parametric Survival Model
summary.survexp Summary function for a survexp object
survfit Create survival curves
survreg.control Package options for survreg and coxph
yates_setup Method for adding new models to the yates function.
survfit.coxph Compute a Survival Curve from a Cox model
survregDtest Verify a survreg distribution
tcut Factors for person-year calculations
survexp Compute Expected Survival
survival-internal Internal survival functions
survexp.fit Compute Expected Survival
transplant Liver transplant waiting list
veteran Veterans' Administration Lung Cancer study
survobrien O'Brien's Test for Association of a Single Variable with Survival
untangle.specials Help Process the `specials' Argument of the `terms' Function.
yates Population prediction
anova.coxph Analysis of Deviance for a Cox model.
No Results!

Vignettes of survival

Name
adjcurve.Rnw
compete.Rnw
multi.Rnw
population.Rnw
refer.bib
splines.Rnw
temp.r
tests.Rnw
tiedtimes.Rnw
timedep.Rnw
validate.Rnw
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Details

Priority recommended
LazyData Yes
LazyLoad Yes
ByteCompile Yes
License LGPL (>= 2)
URL https://github.com/therneau/survival
NeedsCompilation yes
Packaged 2018-04-15 19:36:11 UTC; therneau
Repository CRAN
Date/Publication 2018-04-16 18:25:59 UTC

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