survival v3.1-8

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Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Functions in survival

Name Description
aml Acute Myelogenous Leukemia survival data
attrassign Create new-style "assign" attribute
Surv-methods Methods for Surv objects
aeqSurv Adjudicate near ties in a Surv object
basehaz Alias for the survfit function
anova.coxph Analysis of Deviance for a Cox model.
Surv Create a Survival Object
aareg Aalen's additive regression model for censored data
agreg.fit Cox model fitting functions
bladder Bladder Cancer Recurrences
concordancefit Compute the concordance
colon Chemotherapy for Stage B/C colon cancer
concordance Compute the concordance statistic for data or a model
clogit Conditional logistic regression
cluster Identify clusters.
cipoisson Confidence limits for the Poisson
cgd0 Chronic Granulotomous Disease data
cox.zph Test the Proportional Hazards Assumption of a Cox Regression
dsurvreg Distributions available in survreg.
cgd Chronic Granulotamous Disease data
coxph.wtest Compute a quadratic form
cch Fits proportional hazards regression model to case-cohort data
diabetic Ddiabetic retinopathy
coxph.detail Details of a Cox Model Fit
frailty Random effects terms
heart Stanford Heart Transplant data
mgus Monoclonal gammopathy data
coxph.control Ancillary arguments for controlling coxph fits
lung NCCTG Lung Cancer Data
levels.Surv Return the states of a multi-state Surv object
coxph Fit Proportional Hazards Regression Model
coxph.object Proportional Hazards Regression Object
lines.survfit Add Lines or Points to a Survival Plot
finegray Create data for a Fine-Gray model
coxsurv.fit A direct interface to the `computational engine' of survfit.coxph
flchain Assay of serum free light chain for 7874 subjects.
logan Data from the 1972-78 GSS data used by Logan
logLik.coxph logLik method for a Cox model
is.ratetable Verify that an object is of class ratetable.
kidney Kidney catheter data
ovarian Ovarian Cancer Survival Data
nafld Non-alcohol fatty liver disease
mgus2 Monoclonal gammopathy data
neardate Find the index of the closest value in data set 2, for each entry in data set one.
pbc Mayo Clinic Primary Biliary Cirrhosis Data
nwtco Data from the National Wilm's Tumor Study
myeloid Acute myeloid leukemia
model.matrix.coxph Model.matrix method for coxph models
pbcseq Mayo Clinic Primary Biliary Cirrhosis, sequential data
model.frame.coxph Model.frame method for coxph objects
print.survfit Print a Short Summary of a Survival Curve
print.summary.coxph Print method for summary.coxph objects
plot.cox.zph Graphical Test of Proportional Hazards
print.summary.survfit Print Survfit Summary
print.summary.survexp Print Survexp Summary
plot.aareg Plot an aareg object.
predict.survreg Predicted Values for a `survreg' Object
print.aareg Print an aareg object
plot.survfit Plot method for survfit objects
quantile.survfit Quantiles from a survfit object
predict.coxph Predictions for a Cox model
pspline Smoothing splines using a pspline basis
pyears Person Years
residuals.survreg Compute Residuals for `survreg' Objects
residuals.coxph Calculate Residuals for a `coxph' Fit
rats Rat treatment data from Mantel et al
summary.coxph Summary method for Cox models
ratetable Rate table structure
stanford2 More Stanford Heart Transplant data
ratetableDate Convert date objects to ratetable form
summary.aareg Summarize an aareg fit
strata Identify Stratification Variables
rats2 Rat data from Gail et al.
ridge Ridge regression
statefig Draw a state space figure.
survexp Compute Expected Survival
survfit Create survival curves
survobrien O'Brien's Test for Association of a Single Variable with Survival
survreg Regression for a Parametric Survival Model
solder Data from a soldering experiment
survSplit Split a survival data set at specified times
survexp.object Expected Survival Curve Object
ratetables Census Data Sets for the Expected Survival and Person Years Functions
survConcordance Compute a concordance measure.
reliability Reliability data sets
uspop2 Projected US Population
survregDtest Verify a survreg distribution
summary.pyears Summary function for pyears objecs
survreg.object Parametric Survival Model Object
survexp.fit Compute Expected Survival
vcov.coxph Variance-covariance matrix
tobin Tobin's Tobit data
survfit.coxph Compute a Survival Curve from a Cox model
retinopathy Diabetic Retinopathy
transplant Liver transplant waiting list
survival-internal Internal survival functions
survreg.control Package options for survreg and coxph
survfitcoxph.fit A direct interface to the `computational engine' of survfit.coxph
survreg.distributions Parametric Survival Distributions
rhDNase rhDNASE data set
summary.survexp Summary function for a survexp object
survfit.formula Compute a Survival Curve for Censored Data
summary.survfit Summary of a Survival Curve
survfit.matrix Create Aalen-Johansen estimates of multi-state survival from a matrix of hazards.
yates Population prediction
survcheck Checks of a survival data set
survdiff Test Survival Curve Differences
survfit0 Convert the format of a survfit object.
untangle.specials Help Process the `specials' Argument of the `terms' Function.
udca Data from a trial of usrodeoxycholic acid
survfit.object Survival Curve Object
yates_setup Method for adding new models to the yates function.
tcut Factors for person-year calculations
tmerge Time based merge for survival data
xtfrm.Surv Sorting order for Surv objects
veteran Veterans' Administration Lung Cancer study
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Vignettes of survival

Name
adjcurve.Rnw
approximate.Rnw
compete.Rnw
concordance.Rnw
multi.Rnw
other.Rnw
population.Rnw
refer.bib
splines.Rnw
survival.Rnw
tiedtimes.Rnw
timedep.Rnw
validate.Rnw
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Last month downloads

Details

Priority recommended
Date 2019-11-18
LazyData Yes
LazyLoad Yes
ByteCompile Yes
License LGPL (>= 2)
URL https://github.com/therneau/survival
NeedsCompilation yes
Packaged 2019-12-01 17:42:21 UTC; therneau
Repository CRAN
Date/Publication 2019-12-03 17:30:02 UTC

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