taxize-deprecated: Deprecated functions in taxize
Description
col_classification: This
function is deprecated, and the function col_classification
will be removed in v0.2.0. See classification()eol_hierarchy: This function is deprecated,
and the function eol_hierarchy will be removed in v0.2.0.
See classification()tp_classification:
This function is deprecated, and the function
tp_classification will be removed in v0.2.0. See
classification()
Details
The following functions have just changed names. The old
function names are still available to call, but simply
return a message directing the user to the new function
name.get_seqs: This function has
changed name to ncbi_getbyname(). The function get_seqs
will be removed in v0.2.0.get_genes:
This function has changed name to ncbi_getbyid(), The
function get_genes will be removed in v0.2.0.get_genes_avail: This function has changed
name to ncbi_search(), The function get_genes_avail will be
removed in v0.2.0.tp_acceptednames:
This function has changed name to tp_accnames(), The
function tp_acceptednames will be removed in v0.2.0.tp_namedistributions: This function has
changed name to tp_dist(), The function
tp_namedistributions will be removed in v0.2.0.tp_namereferences: This function has changed
name to tp_refs(), The function tp_namereferences will be
removed in v0.2.0.